GspB Siglec domain
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | DUF4625_like | e6efbA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF4625_like | ECOD (1.6) |
| A | Rib | e6efbA2 | A: a+b two layers | X: a+b domain in platelet binding protein GspB (From Topology) | H: a+b domain in platelet binding protein GspB (From Topology) | T: a+b domain in platelet binding protein GspB | F: Rib | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.60.40.4140 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (utative) | |
| A | 3.10.20.890 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF18938 | Atypical Rib domain (aRib) | Atypical Rib domain | This entry contains atypical Rib (aRib) domains. These are found in a variety of bacterial cell surface proteins. These proteins share a conserved motif with the Rib domain (YPDXXD). The structure of the aRib domain has been solved from two proteins ... | Domain | |
| PF20164 | GspA/SrpA SigLec-like domain (GspA_SrpA_N) | GspA/SrpA SigLec-like domain | This domain is an adhesive domain that binds to sialoglycan [1]. A Thr-Arg motif conserved across homologous carbohydrate-binding adhesins that may orient the sialic acid moiety of carbohydrate ligands [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| SK150 siglec + Unique | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR044024 | Atypical Rib domain | Domain | |
| IPR046785 | SrpA-like, SigLec-like domain | Domain |














