6DO5 | pdb_00006do5

KLHDC2 ubiquitin ligase in complex with USP1 C-end degron

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Kelch_1	e6do5B1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: Kelch_1	ECOD (1.6)
A	Kelch_1	e6do5A1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: Kelch_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF13418	tRNA wybutosine-synthesizing protein 4, beta-propeller (Beta-prop_TYW4)	tRNA wybutosine-synthesizing protein 4, beta-propeller	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth D], D [auth C]	USP1 C-END DEGRON	cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity cysteine-type deubiquitinase activity catalytic activity, acting on a protein hydrolase activity catalytic activity deubiquitinase activity cysteine-type endopeptidase activity endopeptidase activity	regulation of protein stability biological regulation regulation of biological quality response to light stimulus response to stimulus response to radiation response to abiotic stimulus response to UV cellular response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress regulation of protein stability biological regulation regulation of biological quality response to light stimulus response to stimulus response to radiation response to abiotic stimulus response to UV cellular response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair positive regulation of cell communication cell surface receptor signaling pathway via STAT regulation of cellular process positive regulation of signal transduction signaling positive regulation of biological process positive regulation of receptor signaling pathway via STAT regulation of signal transduction positive regulation of receptor signaling pathway via JAK-STAT cell communication positive regulation of response to stimulus regulation of receptor signaling pathway via JAK-STAT signal transduction positive regulation of cellular process regulation of biological process regulation of signaling cell surface receptor signaling pathway regulation of response to stimulus regulation of cell communication regulation of receptor signaling pathway via STAT cell surface receptor signaling pathway via JAK-STAT positive regulation of signaling developmental process multicellular organism development multicellular organismal process skeletal system development anatomical structure development system development protein deubiquitination protein modification by small protein removal macromolecule modification protein metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation or removal monoubiquitinated protein deubiquitination regulation of cellular response to stress DNA damage tolerance regulation of DNA biosynthetic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process translesion synthesis DNA synthesis involved in DNA replication DNA replication biosynthetic process positive regulation of DNA metabolic process regulation of macromolecule biosynthetic process error-prone translesion synthesis regulation of metabolic process DNA biosynthetic process regulation of DNA metabolic process positive regulation of error-prone translesion synthesis nucleic acid biosynthetic process positive regulation of biosynthetic process regulation of response to stress regulation of biosynthetic process regulation of error-prone translesion synthesis positive regulation of DNA biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process proteolysis regulation of DNA repair	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen
A, B	Kelch domain-containing protein 2	ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity	catabolic process ubiquitin-dependent protein catabolic process via the C-end degron rule pathway proteolysis involved in protein catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process cellular process catabolic process ubiquitin-dependent protein catabolic process via the C-end degron rule pathway proteolysis involved in protein catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process cellular process macromolecule metabolic process protein metabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle nuclear lumen nuclear membrane membrane endomembrane system organelle envelope nuclear envelope organelle membrane cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex Cul2-RING ubiquitin ligase complex transferase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth D], D [auth C]	IPR033815	Ubiquitin specific peptidase 1	Domain
C [auth D], D [auth C]	IPR050164	Ubiquitin carboxyl-terminal hydrolases	Family
C [auth D], D [auth C]	IPR028889	Ubiquitin specific protease UPS, catalytic domain	Domain
C [auth D], D [auth C]	IPR018200	Ubiquitin specific protease, conserved site	Conserved Site
C [auth D], D [auth C]	IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Domain
C [auth D], D [auth C]	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B	IPR015915	Kelch-type beta-propeller	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth D], D [auth C]	Pharos: O94782	amyotrophic lateral sclerosis dermatomyositis large cell medulloblastoma malignant glioma metabolic syndrome X osteosarcoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor glioblastoma lung cancer malignant mesothelioma myopathy ovarian cancer psoriasis breast cancer amyotrophic lateral sclerosis dermatomyositis large cell medulloblastoma malignant glioma metabolic syndrome X osteosarcoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor glioblastoma lung cancer malignant mesothelioma myopathy ovarian cancer psoriasis breast cancer juvenile dermatomyositis lymphoplasmacytic lymphoma medulloblastoma non-alcoholic fatty liver disease Pick disease
A, B	Pharos: Q9Y2U9	ovarian cancer plasma cell myeloma pancreatic ductal adenocarcinoma Pick disease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.