Annotations: 6DGD

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PriA_like	e6dgdB1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PriA_like	ECOD (1.6)
B	PRK05580_C	e6dgdB7	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S10 (From Topology)	T: Ribosomal protein S10	F: PRK05580_C	ECOD (1.6)
B	PRK05580_N	e6dgdB4	A: a+b complex topology	X: Primosome assembly protein PriA 3' DNA-binding domain (From Topology)	H: Primosome assembly protein PriA 3' DNA-binding domain (From Topology)	T: Primosome assembly protein PriA 3' DNA-binding domain	F: PRK05580_N	ECOD (1.6)
B	DEAD	e6dgdB6	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: DEAD	ECOD (1.6)
B	Helicase_C_9	e6dgdB5	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Helicase_C_9	ECOD (1.6)
B	PriA	e6dgdB2	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PriA	ECOD (1.6)
B	priA	e6dgdB3	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: priA	ECOD (1.6)
A	PriA_like	e6dgdA2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PriA_like	ECOD (1.6)
A	PRK05580_C	e6dgdA5	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S10 (From Topology)	T: Ribosomal protein S10	F: PRK05580_C	ECOD (1.6)
A	PRK05580_N	e6dgdA6	A: a+b complex topology	X: Primosome assembly protein PriA 3' DNA-binding domain (From Topology)	H: Primosome assembly protein PriA 3' DNA-binding domain (From Topology)	T: Primosome assembly protein PriA 3' DNA-binding domain	F: PRK05580_N	ECOD (1.6)
A	DEAD	e6dgdA4	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: DEAD	ECOD (1.6)
A	Helicase_C_9	e6dgdA7	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Helicase_C_9	ECOD (1.6)
A	PriA	e6dgdA1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PriA	ECOD (1.6)
A	priA	e6dgdA3	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: priA	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth Y]	DNA (5'-D(PGPAPGPCPAPCPGPCPCPGPAPCP*T)-3')	-	-	-
D [auth X], F [auth Z]	DNA (5'-D(PGPTPCPGPGPCPGPTPGPCPTPC)-3')	-	-	-
C [auth W]	DNA (5'-D(PAPGPCPAPCPGPCPCPGPAPCPT)-3')	-	-	-
A, B	Primosomal protein N'	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity cation binding transition metal ion binding zinc ion binding metal ion binding nucleic acid conformation isomerase activity isomerase activity DNA helicase activity catalytic activity, acting on a nucleic acid helicase activity 3'-5' DNA helicase activity ATP-dependent activity, acting on DNA catalytic activity, acting on DNA macromolecular conformation isomerase activity	nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication DNA replication initiation metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus double-strand break repair response to stimulus cellular response to stress nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication DNA replication initiation metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus double-strand break repair response to stimulus cellular response to stress DNA damage response response to stress DNA repair DNA replication, synthesis of primer RNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process DNA recombination	primosome complex protein-containing complex intracellular anatomical structure protein-DNA complex intracellular membraneless organelle chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle replication fork replisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR041222	Primosomal protein N', 3' DNA-binding domain	Domain
A, B	IPR042115	Primosomal protein N', 3' DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR001650	Helicase, C-terminal domain-like	Domain
A, B	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
A, B	IPR048949	Primosomal protein N'-like, winged helix	Domain
A, B	IPR041236	Primosomal protein N, C-terminal domain	Domain
A, B	IPR011545	DEAD/DEAH-box helicase domain	Domain
A, B	IPR005259	Primosomal protein N'	Family
A, B	IPR040498	PriA DNA helicase, Cys-rich region (CRR) domain	Domain
A, B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.