6DEF | pdb_00006def

Vps1 GTPase-BSE fusion complexed with GMPPCP

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Mur_ligase_M	e6defA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: ADP-ribosylation	T: ADP-ribosylation	F: Mur_ligase_M	ECOD (v294.1)
B	Anoctamin	e6defB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Anoctamin	ECOD (v294.1)
D	Anoctamin	e6defD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Anoctamin	ECOD (v294.1)
C	Anoctamin	e6defC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Anoctamin	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01031	Dynamin central region (Dynamin_M)	Dynamin central region	-	Family
A, B, C, D	PF00350	Dynamin family (Dynamin_N)	Dynamin family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Vps1 GTPase-BSE	cytoskeletal protein binding microtubule binding protein binding binding tubulin binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding cytoskeletal protein binding microtubule binding protein binding binding tubulin binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	mitochondrion distribution localization mitochondrion localization organelle localization intracellular distribution of mitochondria import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport cellular component organization peroxisome organization organelle organization mitochondrion distribution localization mitochondrion localization organelle localization intracellular distribution of mitochondria import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport cellular component organization peroxisome organization organelle organization peroxisome fission organelle fission cellular component organization or biogenesis mitochondrial fission mitochondrion organization vacuole organization	cellular anatomical structure membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle peroxisome microbody cytoplasm intracellular membrane-bounded organelle polymeric cytoskeletal fiber intracellular membraneless organelle cytoskeleton membraneless organelle cellular anatomical structure membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle peroxisome microbody cytoplasm intracellular membrane-bounded organelle polymeric cytoskeletal fiber intracellular membraneless organelle cytoskeleton membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR003130	Dynamin GTPase effector	Domain
A, B, C, D	IPR020850	GTPase effector domain	Domain
A, B, C, D	IPR001401	Dynamin, GTPase domain	Domain
A, B, C, D	IPR045063	Dynamin, N-terminal	Domain
A, B, C, D	IPR030381	Dynamin-type guanine nucleotide-binding (G) domain	Domain
A, B, C, D	IPR000375	Dynamin stalk domain	Domain
A, B, C, D	IPR022812	Dynamin	Family
A, B, C, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.