6CTD | pdb_00006ctd

C-terminal domain truncation of the Mycobacterium tuberculosis Mechanosensitive Channel of Large Conductance MscL

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2 Family	Gated mechanosensitive channel	8099047	4001874	SCOP2 (2022-06-29)
J	SCOP2 Superfamily	Gated mechanosensitive channel	8099048	3000492	SCOP2 (2022-06-29)
I	SCOP2B Superfamily	Gated mechanosensitive channel	8099048	3000492	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Gated mechanosensitive channel	8099048	3000492	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Gated mechanosensitive channel	8099048	3000492	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Gated mechanosensitive channel	8099048	3000492	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Gated mechanosensitive channel	8099048	3000492	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Gated mechanosensitive channel	8099048	3000492	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Gated mechanosensitive channel	8099048	3000492	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Gated mechanosensitive channel	8099048	3000492	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Gated mechanosensitive channel	8099048	3000492	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	Anoctamin	e6ctdJ1	A: alpha bundles	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Anoctamin	ECOD (develop294)
I	Anoctamin	e6ctdI1	A: alpha bundles	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Anoctamin	ECOD (develop294)
H	Anoctamin	e6ctdH1	A: alpha bundles	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Anoctamin	ECOD (develop294)
G	Anoctamin	e6ctdG1	A: alpha bundles	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Anoctamin	ECOD (develop294)
F	Anoctamin	e6ctdF1	A: alpha bundles	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Anoctamin	ECOD (develop294)
E	Anoctamin	e6ctdE1	A: alpha bundles	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Anoctamin	ECOD (develop294)
D	Anoctamin	e6ctdD1	A: alpha bundles	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Anoctamin	ECOD (develop294)
C	Anoctamin	e6ctdC1	A: alpha bundles	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Anoctamin	ECOD (develop294)
B	Anoctamin	e6ctdB1	A: alpha bundles	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Anoctamin	ECOD (develop294)
A	PP-binding	e6ctdA1	A: alpha bundles	X: PriB N-terminal domain-like	H: ADP-ribosylation	T: ADP-ribosylation	F: PP-binding	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Large-conductance mechanosensitive channel	gated channel activity passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity identical protein binding protein binding binding monoatomic ion channel activity monoatomic ion transmembrane transporter activity mechanosensitive monoatomic ion channel activity	transmembrane transport localization transport cellular process establishment of localization monoatomic ion transport	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR037673	Large-conductance mechanosensitive channel/anditomin synthesis protein L	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR036019	Large-conductance mechanosensitive channel MscL	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR001185	Large-conductance mechanosensitive channel	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR019823	Large-conductance mechanosensitive channel, conserved site	Conserved Site

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	OPM	Transmembrane	Alpha-helical polytopic	Large conductance mechanosensitive ion channel (MscL)	Large conductance mechanosensitive ion channel (MscL)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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