6CKU | pdb_00006cku

Solution structure of the zebrafish granulin AaE

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Granulin repeat	8079678	4003260	SCOP2 (2022-06-29)
A	SCOP2 Family	Granulin repeat	8092890	4003260	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Granulin repeat	8079679	3000520	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Granulin repeat	8092891	3000520	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Granulin	e6ckuA1	A: few secondary structure elements	X: Granulin repeat (From Topology)	H: Granulin repeat (From Topology)	T: Granulin repeat	F: Granulin	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Granulin-AaE	-	developmental process multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development system development axon extension axonogenesis cellular developmental process developmental growth cell projection organization developmental process multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development system development axon extension axonogenesis cellular developmental process developmental growth cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell growth cell morphogenesis cellular component organization neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation cellular component organization or biogenesis neuron projection extension plasma membrane bounded cell projection organization developmental cell growth growth nervous system development axon development cell morphogenesis involved in neuron differentiation developmental growth involved in morphogenesis generation of neurons anatomical structure morphogenesis neuron development cellular process cell differentiation in spinal cord central nervous system neuron differentiation spinal cord development central nervous system development ventral spinal cord development spinal cord motor neuron differentiation behavior locomotory behavior swimming behavior retina layer formation camera-type eye morphogenesis sensory organ development eye development retina development in camera-type eye visual system development neural retina development retina morphogenesis in camera-type eye eye morphogenesis sensory organ morphogenesis camera-type eye development anatomical structure formation involved in morphogenesis animal organ morphogenesis sensory system development photoreceptor cell differentiation eye photoreceptor cell differentiation photoreceptor cell development eye photoreceptor cell development posterior lateral line system development lateral line development posterior lateral line neuromast development tissue development lateral line system development posterior lateral line development mechanosensory lateral line system development neuromast development membrane organization cellular localization postsynapse organization skeletal muscle acetylcholine-gated channel clustering localization within membrane protein localization to membrane localization cell junction organization neuromuscular junction development receptor clustering macromolecule localization synapse organization intracellular protein localization postsynaptic membrane organization	cellular anatomical structure extracellular region cell periphery plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR037277	Granulin superfamily	Homologous Superfamily
A	IPR000118	Granulin	Domain
A	IPR039036	Granulin family	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.