6CIB | pdb_00006cib

The structure of YcaO from Methanopyrus kandleri bound with AMPPCP and Mg2+

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FV-sete6cibF1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (v294.1)
EV-sete6cibE1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (v294.1)
DV-sete6cibD1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (v294.1)
CV-sete6cibC1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (v294.1)
BV-sete6cibB1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (v294.1)
AV-sete6cibA1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
E3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
D3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
C3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
B3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
A3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02624YcaO cyclodehydratase, ATP-ad Mg2+-binding (YcaO)YcaO cyclodehydratase, ATP-ad Mg2+-binding- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
YcaO - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR003776YcaO-like domainDomain
A, B, C, D, E
IPR017667MTH_987/MJ1094Family