Annotations: 6CHT

HNF4alpha in complex with the corepressor EBP1 fragment

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
S [auth V]	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
T [auth W]	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
R [auth T]	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
Q [auth S]	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
P [auth Q]	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
O [auth P]	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8038367	3001442	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CtsR_C	e6chtA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: CtsR_C	ECOD (v294.2)
J	La	e6chtJ1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)
S [auth V]	La	e6chtV1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)
T [auth W]	La	e6chtW1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)
R [auth T]	La	e6chtT1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)
Q [auth S]	La	e6chtS1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)
P [auth Q]	La	e6chtQ1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)
O [auth P]	La	e6chtP1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)
N	La	e6chtN1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)
M	La	e6chtM1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)
K	La	e6chtK1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)
H	La	e6chtH1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)
G	La	e6chtG1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)
E	La	e6chtE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)
D	La	e6chtD1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)
B	La	e6chtB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: La	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (utative)
J	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (utative)
S [auth V]	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
T [auth W]	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
R [auth T]	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
Q [auth S]	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
P [auth Q]	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
O [auth P]	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
N	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
M	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
K	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
H	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
G	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (utative)
E	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
D	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (utative)
B	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, D, E, G, A, B, D, E, G, H, J, K, M, N, O [auth P], P [auth Q], Q [auth S], R [auth T], S [auth V], T [auth W]	PF00104	Ligand-binding domain of nuclear hormone receptor (Hormone_recep)	Ligand-binding domain of nuclear hormone receptor	This all helical domain is involved in binding the hormone in these receptors.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F, I, L	Proliferation-associated protein 2G4	binding nucleic acid binding RNA binding transcription corepressor activity transcription regulator activity transcription coregulator activity ubiquitin protein ligase binding protein binding ubiquitin-like protein ligase binding enzyme binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death ribonucleoprotein complex biogenesis rRNA processing cellular component biogenesis ribosome biogenesis cellular component organization or biogenesis RNA processing rRNA metabolic process regulation of protein metabolic process translation protein biosynthetic process post-transcriptional regulation of gene expression regulation of translation protein metabolic process developmental process regulation of developmental process cellular developmental process positive regulation of biological process regulation of cell differentiation positive regulation of developmental process positive regulation of cell differentiation cell differentiation positive regulation of cellular process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle cytoplasm cytosol lytic vacuole intracellular vesicle cytoplasmic vesicle lumen vacuolar lumen endomembrane system cytoplasmic vesicle lysosome vesicle lumen azurophil granule vacuole secretory granule lumen azurophil granule lumen secretory granule primary lysosome secretory vesicle protein-containing complex ribonucleoprotein complex
A, B, D, E, G, A, B, D, E, G, H, J, K, M, N, O [auth P], P [auth Q], Q [auth S], R [auth T], S [auth V], T [auth W]	Hepatocyte nuclear factor 4-alpha	protein binding binding signaling receptor binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding RNA polymerase II transcription regulatory region sequence-specific DNA binding protein binding binding signaling receptor binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding fatty acid binding organic acid binding ion binding anion binding lipid binding carboxylic acid binding monocarboxylic acid binding small molecule binding chromatin binding transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription factor activity, RNA polymerase II-specific identical protein binding protein homodimerization activity protein dimerization activity nuclear receptor activity molecular transducer activity signaling receptor activity ligand-modulated transcription factor activity cation binding transition metal ion binding zinc ion binding metal ion binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis blood coagulation response to stress coagulation regulation of biological quality response to wounding developmental process cellular developmental process cell differentiation regulation of lipid metabolic process lipid metabolic process phospholipid homeostasis chemical homeostasis homeostatic process lipid homeostasis rhythmic process circadian rhythm regulation of circadian rhythm triglyceride homeostasis acylglycerol homeostasis regulation of growth regulation of cellular component organization growth negative regulation of cell growth regulation of cell growth cell growth cellular component organization negative regulation of growth cellular component organization or biogenesis sterol homeostasis cholesterol homeostasis response to hexose response to monosaccharide response to carbohydrate response to glucose response to chemical response to oxygen-containing compound regulation of localization establishment of protein localization nitrogen compound transport regulation of hormone secretion regulation of protein localization regulation of peptide secretion transport signaling hormone secretion protein localization to extracellular region cell communication localization peptide secretion regulation of secretion by cell secretion by cell signal release intracellular protein localization regulation of peptide hormone secretion regulation of signaling regulation of transport secretion regulation of hormone levels regulation of peptide transport regulation of establishment of protein localization establishment of protein localization to extracellular region export from cell cell-cell signaling regulation of protein transport protein secretion establishment of localization regulation of protein secretion regulation of secretion peptide transport protein transport regulation of insulin secretion peptide hormone secretion macromolecule localization hormone transport regulation of cell communication insulin secretion cellular response to stimulus cellular response to chemical stimulus cellular response to xenobiotic stimulus xenobiotic metabolic process response to xenobiotic stimulus negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation cellular response to nitrogen compound response to peptide hormone regulation of signal transduction cellular response to growth hormone stimulus cell surface receptor protein tyrosine kinase signaling pathway cellular response to endogenous stimulus regulation of growth hormone receptor signaling pathway response to hormone signal transduction enzyme-linked receptor protein signaling pathway cellular response to hormone stimulus growth hormone receptor signaling pathway cell surface receptor signaling pathway response to endogenous stimulus cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound response to growth hormone regulation of response to stimulus positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II glucose homeostasis carbohydrate homeostasis	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F, I, L	IPR047113	Proliferation-associated protein 2G4/ARX1	Family
C, F, I, L	IPR018349	Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site	Binding Site
C, F, I, L	IPR036005	Creatinase/aminopeptidase-like	Homologous Superfamily
C, F, I, L	IPR000994	Peptidase M24	Domain
C, F, I, L	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
C, F, I, L	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
C, F, I, L	IPR004545	PA2G4 family	Family
A, B, D, E, G, A, B, D, E, G, H, J, K, M, N, O [auth P], P [auth Q], Q [auth S], R [auth T], S [auth V], T [auth W]	IPR001628	Zinc finger, nuclear hormone receptor-type	Domain
A, B, D, E, G, A, B, D, E, G, H, J, K, M, N, O [auth P], P [auth Q], Q [auth S], R [auth T], S [auth V], T [auth W]	IPR050274	Nuclear hormone receptor family NR2 subfamily	Family
A, B, D, E, G, A, B, D, E, G, H, J, K, M, N, O [auth P], P [auth Q], Q [auth S], R [auth T], S [auth V], T [auth W]	IPR001723	Nuclear hormone receptor	Family
A, B, D, E, G, A, B, D, E, G, H, J, K, M, N, O [auth P], P [auth Q], Q [auth S], R [auth T], S [auth V], T [auth W]	IPR049635	Hepatocyte nuclear factor 4, ligand-binding domain	Domain
A, B, D, E, G, A, B, D, E, G, H, J, K, M, N, O [auth P], P [auth Q], Q [auth S], R [auth T], S [auth V], T [auth W]	IPR049636	Hepatocyte nuclear factor 4-like, DNA-binding domain	Domain
A, B, D, E, G, A, B, D, E, G, H, J, K, M, N, O [auth P], P [auth Q], Q [auth S], R [auth T], S [auth V], T [auth W]	IPR013088	Zinc finger, NHR/GATA-type	Homologous Superfamily
A, B, D, E, G, A, B, D, E, G, H, J, K, M, N, O [auth P], P [auth Q], Q [auth S], R [auth T], S [auth V], T [auth W]	IPR000536	Nuclear hormone receptor, ligand-binding domain	Domain
A, B, D, E, G, A, B, D, E, G, H, J, K, M, N, O [auth P], P [auth Q], Q [auth S], R [auth T], S [auth V], T [auth W]	IPR035500	Nuclear hormone receptor-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, F, I, L	: Q9UQ80	vitiligo allergic rhinitis asthma Disease Exacerbation gastric cancer hereditary diffuse gastric adenocarcinoma malignant mesothelioma polycystic ovary syndrome alopecia areata attention deficit hyperactivity disorder, inattentive type gastric neoplasm large cell medulloblastoma subependymal giant cell astrocytoma anorexia nervosa cleft lip vitiligo allergic rhinitis asthma Disease Exacerbation gastric cancer hereditary diffuse gastric adenocarcinoma malignant mesothelioma polycystic ovary syndrome alopecia areata attention deficit hyperactivity disorder, inattentive type gastric neoplasm large cell medulloblastoma subependymal giant cell astrocytoma anorexia nervosa cleft lip Emery-Dreifuss muscular dystrophy Hashimoto thyroiditis lung cancer myopathy
A, B, D, E, G, A, B, D, E, G, H, J, K, M, N, O [auth P], P [auth Q], Q [auth S], R [auth T], S [auth V], T [auth W]	: P41235	maturity-onset diabetes of the young ulcerative colitis Fanconi renotubular syndrome 4 with maturity-onset diabetes of the young type 2 diabetes mellitus maturity-onset diabetes of the young type 1 renal cysts and diabetes syndrome hyperinsulinism due to HNF4A deficiency hyperinsulinemic hypoglycemia metabolic syndrome X acquired metabolic disease Diabetes Mellitus, Non-Insulin-Dependent hyperinsulinism large cell medulloblastoma pancreatic ductal adenocarcinoma cancer maturity-onset diabetes of the young ulcerative colitis Fanconi renotubular syndrome 4 with maturity-onset diabetes of the young type 2 diabetes mellitus maturity-onset diabetes of the young type 1 renal cysts and diabetes syndrome hyperinsulinism due to HNF4A deficiency hyperinsulinemic hypoglycemia metabolic syndrome X acquired metabolic disease Diabetes Mellitus, Non-Insulin-Dependent hyperinsulinism large cell medulloblastoma pancreatic ductal adenocarcinoma cancer gallbladder disease intellectual disability liver disease pancreatic intraductal papillary-mucinous neoplasm diabetes mellitus inborn errors of metabolism intestinal disease malignant glioma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.