Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth H]SCOP2 FamilyND4 antiporter-like subunits8059301 4005749 SCOP2 (2022-06-29)
A [auth H]SCOP2 SuperfamilyAntiporter subunits half-channel-like8059302 3002280 SCOP2 (2022-06-29)
A [auth H]SCOP2 SuperfamilyAntiporter subunits half-channel-like8093345 3002280 SCOP2 (2022-06-29)
J [auth B]SCOP2 FamilyMonovalent cation/H+ antiporter MBH subunit F8093341 4007804 SCOP2 (2022-06-29)
J [auth B]SCOP2 SuperfamilyNADH-quinone oxidoreductase subunit 11-like8093342 3002200 SCOP2 (2022-06-29)
K [auth J]SCOP2 FamilyNq06/HydA N-terminal domain-like8085730 4007641 SCOP2 (2022-06-29)
K [auth J]SCOP2 SuperfamilyNqo6/HydA N-terminal domain-like8085731 3002291 SCOP2 (2022-06-29)
M [auth L]SCOP2 FamilyNqo4-like8085742 4000433 SCOP2 (2022-06-29)
M [auth L]SCOP2 SuperfamilyHydB/Nqo4-like8085743 3001849 SCOP2 (2022-06-29)
B [auth G]SCOP2 FamilyNADH-quinone oxidoreductase NDH subunit 11-like8093352 4005793 SCOP2 (2022-06-29)
B [auth G]SCOP2 SuperfamilyNADH-quinone oxidoreductase subunit 11-like8093353 3002200 SCOP2 (2022-06-29)
C [auth D]SCOP2 FamilyNADH-quinone oxidoreductase NDH subunit 10-like8093354 4005844 SCOP2 (2022-06-29)
C [auth D]SCOP2 SuperfamilyNADH-quinone oxidoreductase subunit 11-like8093355 3002200 SCOP2 (2022-06-29)
E [auth M]SCOP2 FamilyNADH-quinone oxidoreductase subunit 8-like8067554 4005664 SCOP2 (2022-06-29)
E [auth M]SCOP2 SuperfamilyAntiporter subunits half-channel-like8067555 3002280 SCOP2 (2022-06-29)
I [auth C]SCOP2 FamilyMonovalent cation/H+ antiporter MBH subunit G8093343 4007805 SCOP2 (2022-06-29)
I [auth C]SCOP2 SuperfamilyNADH-quinone oxidoreductase subunit 11-like8093344 3002200 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth H]PF00361,PF00662e6cfwH1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: PF00361,PF00662ECOD (1.6)
K [auth J]PF01058e6cfwJ1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: PF01058ECOD (1.6)
L [auth K]PF00329e6cfwK1 A: a+b two layersX: Nqo5-likeH: Nqo5-like (From Topology)T: Nqo5-likeF: PF00329ECOD (1.6)
M [auth L]PF00346e6cfwL1 A: alpha complex topologyX: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)T: alpha-helical domain in nickel-iron hydrogenase, large subunitF: PF00346ECOD (1.6)
M [auth L]F_UNCLASSIFIEDe6cfwL2 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology)T: Ni-Fe binding domain in nickel-iron hydrogenase large subunitF: F_UNCLASSIFIEDECOD (1.6)
NPF12838e6cfwN1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF12838ECOD (1.6)
B [auth G]PF00420e6cfwG1 A: alpha complex topologyX: NADH-quinone oxidoreductase subunit K (From Topology)H: NADH-quinone oxidoreductase subunit K (From Topology)T: NADH-quinone oxidoreductase subunit KF: PF00420ECOD (1.6)
E [auth M]PF00146e6cfwM1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit 8 (Nqo8)-relatedF: PF00146ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
K [auth J]3.40.50.12280 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth H]PF00361Proton-conducting membrane transporter (Proton_antipo_M)Proton-conducting membrane transporter- Family
A [auth H]PF00662NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus (Proton_antipo_N)NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus- Family
J [auth B]PF04066Multiple resistance and pH regulation protein F (MrpF / PhaF) (MrpF_PhaF)Multiple resistance and pH regulation protein F (MrpF / PhaF)- Family
K [auth J]PF01058NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6)NADH ubiquinone oxidoreductase, 20 Kd subunit- Family
L [auth K]PF00329Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa)Respiratory-chain NADH dehydrogenase, 30 Kd subunit- Family
M [auth L]PF00374Nickel-dependent hydrogenase (NiFeSe_Hases)Nickel-dependent hydrogenase- Family
M [auth L]PF00346Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa)Respiratory-chain NADH dehydrogenase, 49 Kd subunit- Family
PF131874Fe-4S dicluster domain (Fer4_9)4Fe-4S dicluster domain- Family
B [auth G]PF00420NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (Oxidored_q2)NADH-ubiquinone/plastoquinone oxidoreductase chain 4L- Family
C [auth D]PF13244MBH, subunit D (MbhD)MBH, subunit DHydrogen gas-evolving membrane-bound hydrogenase (MBH) is a respiratory complex homologous to the quinone-reducing Complex I. Like Complex I, MBH has peripheral and membrane arms. MBH is made of 14 subunits (MbhA-N). MbhJ, K, L, N and M form the Mem ...Hydrogen gas-evolving membrane-bound hydrogenase (MBH) is a respiratory complex homologous to the quinone-reducing Complex I. Like Complex I, MBH has peripheral and membrane arms. MBH is made of 14 subunits (MbhA-N). MbhJ, K, L, N and M form the Membrane-anchored hydrogenase module. MbhJ, K, L, N are predicted to be exposed to the cytoplasm and form the peripheral arm. The remaining 10 subunits are predicted to be integral membrane proteins forming the membrane arm, made of 44 transmembrane helices (TMH) [2, 3]. MbhA, B, C and F form the Sodium translocation module. MbhD, E, G and H form the Proton translocation module. MbhI is the linker between the hydrogenase module and the proton-translocating membrane module. It anchors the discontinuous TMH7 of MbhH via its middle lateral helix and the C-terminal of TMH2, found in MbhE. MbhD and MbhE together are equivalent to Nqo10 of Complex I [1]. MbhD has three TM helices.
Domain
E [auth M]PF00146NADH dehydrogenase (NADHdh)NADH dehydrogenase- Family
PF04039Domain related to MnhB subunit of Na+/H+ antiporter (MnhB)Domain related to MnhB subunit of Na+/H+ antiporter- Family
G [auth A]PF01899Na+/H+ ion antiporter subunit (MNHE)Na+/H+ ion antiporter subunit- Family
H [auth E]PF20501MBH, subunit E (MbhE)MBH, subunit EHydrogen gas-evolving membrane-bound hydrogenase (MBH) is a respiratory complex homologous to the quinone-reducing Complex I. Like Complex I, MBH has peripheral and membrane arms. MBH is made of 14 subunits (MbhA-N). MbhJ, K, L, N and M form the Mem ...Hydrogen gas-evolving membrane-bound hydrogenase (MBH) is a respiratory complex homologous to the quinone-reducing Complex I. Like Complex I, MBH has peripheral and membrane arms. MBH is made of 14 subunits (MbhA-N). MbhJ, K, L, N and M form the Membrane-anchored hydrogenase module. MbhJ, K, L, N are predicted to be exposed to the cytoplasm and form the peripheral arm. The remaining 10 subunits are predicted to be integral membrane proteins forming the membrane arm, made of 44 transmembrane helices (TMH) [2, 3]. MbhA, B, C and F form the Sodium translocation module. MbhD, E, G and H form the Proton translocation module. MbhI is the linker between the hydrogenase module and the proton-translocating membrane module. It anchors the discontinuous TMH7 of MbhH via its middle lateral helix and the C-terminal of TMH2, found in MbhE. MbhD and MbhE together are equivalent to Nqo10 of Complex I [1]. MbhE has two transmembrane helices: TMH1 and TMH2.
Domain
I [auth C]PF03334Na+/H+ antiporter subunit (PhaG_MnhG_YufB)Na+/H+ antiporter subunit- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth H]Monovalent cation/H+ antiporter subunit D- -
J [auth B]Monovalent cation/H+ antiporter subunit F -
K [auth J]Probable membrane-bound hydrogenase subunit mbhJ
L [auth K]Membrane-bound hydrogenase subunit beta
M [auth L]Membrane-bound hydrogenase subunit alpha
NADH-plastoquinone oxidoreductase subunit -
B [auth G]Monovalent cation/H+ antiporter subunit C- -
C [auth D]MBH subunit- -
D [auth I]MBH subunit- -
E [auth M]Mbh13 NADH dehydrogenase subunit- -
Monovalent cation/H+ antiporter subunit B- -
G [auth A]Monovalent cation/H+ antiporter subunit E -
H [auth E]MBH subunit
I [auth C]Monovalent cation/H+ antiporter subunit G

InterPro: Protein Family Classification InterPro Database Homepage