Annotations: 6C39

Apo crystal structure of wild-type S. aureus penicillin binding protein 4 (PBP4)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d6c39b2	All beta proteins	Penicillin-binding protein associated domain	Penicillin-binding protein associated domain	automated matches	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
B	d6c39b1	Multi-domain proteins (alpha and beta)	beta-lactamase/transpeptidase-like	beta-lactamase/transpeptidase-like	beta-Lactamase/D-ala carboxypeptidase	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
A	d6c39a2	All beta proteins	Penicillin-binding protein associated domain	Penicillin-binding protein associated domain	automated matches	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
A	d6c39a1	Multi-domain proteins (alpha and beta)	beta-lactamase/transpeptidase-like	beta-lactamase/transpeptidase-like	beta-Lactamase/D-ala carboxypeptidase	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SH2	e6c39B1	A: alpha arrays	X: L-aspartase middle domain-like	H: L-aspartase middle domain-like	T: L-aspartase middle domain-like	F: SH2	ECOD (v295.2)
A	TGF_beta	e6c39A1	A: alpha arrays	X: L-aspartase middle domain-like	H: L-aspartase middle domain-like	T: L-aspartase middle domain-like	F: TGF_beta	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (4.3.0)
B	2.30.140.20	Mainly Beta	Roll	Spermidine Synthase	Chain: A, domain 2	CATH (4.3.0)
A	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (4.3.0)
A	2.30.140.20	Mainly Beta	Roll	Spermidine Synthase	Chain: A, domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Serine-type D-Ala-D-Ala carboxypeptidase	serine-type exopeptidase activity peptidase activity catalytic activity, acting on a protein serine hydrolase activity hydrolase activity serine-type D-Ala-D-Ala carboxypeptidase activity serine-type carboxypeptidase activity serine-type peptidase activity exopeptidase activity catalytic activity carboxypeptidase activity beta-lactamase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	antibiotic metabolic process beta-lactam antibiotic catabolic process catabolic process lactam catabolic process metabolic process cellular process small molecule metabolic process antibiotic catabolic process lactam metabolic process proteolysis primary metabolic process protein metabolic process macromolecule metabolic process response to stimulus antibiotic metabolic process beta-lactam antibiotic catabolic process catabolic process lactam catabolic process metabolic process cellular process small molecule metabolic process antibiotic catabolic process lactam metabolic process proteolysis primary metabolic process protein metabolic process macromolecule metabolic process response to stimulus response to chemical response to antibiotic	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR015294	Penicillin-binding protein 4, C-terminal domain	Domain
A, B	IPR018044	Peptidase S11, D-alanyl-D-alanine carboxypeptidase A	Family
A, B	IPR012338	Beta-lactamase/transpeptidase-like	Homologous Superfamily
A, B	IPR015956	Penicillin-binding protein, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR000871	Beta-lactamase, class-A	Family
A, B	IPR001967	Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal	Domain
A, B	IPR037091	Penicillin-binding protein 4, C-terminal domain superfamily	Homologous Superfamily

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