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 6B88 | pdb_00006b88

E. coli LepB in complex with GNE0775 ((4S,7S,10S)-10-((S)-4-amino-2-(2-(4-(tert-butyl)phenyl)-4-methylpyrimidine-5-carboxamido)-N-methylbutanamido)-16,26-bis(2-aminoethoxy)-N-(2-iminoethyl)-7-methyl-6,9-dioxo-5,8-diaza-1,2(1,3)-dibenzenacyclodecaphane-4-carboxamide)

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6b88a_ All beta proteins LexA/Signal peptidase LexA/Signal peptidase Type 1 signal peptidase Type 1 signal peptidase (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
Bd6b88b_ All beta proteins LexA/Signal peptidase LexA/Signal peptidase Type 1 signal peptidase Type 1 signal peptidase (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyLexA/Signal peptidase-like 8043153 3000103 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLexA/Signal peptidase-like 8043153 3000103 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APP-bindinge6b88A1 A: alpha arraysX: fingers domain in bacteriophage RB69-like DNA polymerase IH: fingers domain in bacteriophage RB69-like DNA polymerase IT: fingers domain in bacteriophage RB69-like DNA polymerase IF: PP-bindingECOD (v295.2)
BCadherine6b88B1 A: alpha arraysX: fingers domain in bacteriophage RB69-like DNA polymerase IH: fingers domain in bacteriophage RB69-like DNA polymerase IT: fingers domain in bacteriophage RB69-like DNA polymerase IF: CadherinECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.10.109.10 Mainly Beta Ribbon Umud Fragment, subunit A Umud Fragment, subunit ACATH (4.3.0)
A2.170.230.10 Mainly Beta Beta Complex Signal Peptidase I Chain: A, domain 2CATH (4.3.0)
B2.10.109.10 Mainly Beta Ribbon Umud Fragment, subunit A Umud Fragment, subunit ACATH (4.3.0)
B2.170.230.10 Mainly Beta Beta Complex Signal Peptidase I Chain: A, domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF10502Signal peptidase, peptidase S26 (Peptidase_S26)Signal peptidase, peptidase S26This is a family of membrane signal serine endopeptidases which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal, signal peptides as proteins are translocated across membranes. The ...This is a family of membrane signal serine endopeptidases which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal, signal peptides as proteins are translocated across membranes. The active site residues take the form of a catalytic dyad that is Ser, Lys in subfamily S26A; the Ser is the nucleophile in catalysis, and the Lys is the general base.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Signal peptidase I

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR019533Peptidase S26Domain
A, B
IPR019766Signal peptidase I, all-beta subdomainHomologous Superfamily
A, B
IPR019756Peptidase S26A, signal peptidase I, serine active siteActive Site
A, B
IPR019758Peptidase S26A, signal peptidase I, conserved siteConserved Site
A, B
IPR019757Peptidase S26A, signal peptidase I, lysine active siteActive Site
A, B
IPR036286LexA/Signal peptidase-like superfamilyHomologous Superfamily
A, B
IPR000223Peptidase S26A, signal peptidase IFamily