6B6V
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase, as-isolated (protein batch 1), canonical C-cluster
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03063 | e6b6vA3 | A: alpha bundles | X: Helical bundle domain in prismane-like proteins (From Topology) | H: Helical bundle domain in prismane-like proteins (From Topology) | T: Helical bundle domain in prismane-like proteins | F: PF03063 | ECOD (1.6) |
A | PF03063 | e6b6vA4 | A: a/b three-layered sandwiches | X: Rossmann-like domain in prismane-like proteins (From Topology) | H: Rossmann-like domain in prismane-like proteins (From Topology) | T: Rossmann-like domain in prismane-like proteins | F: PF03063 | ECOD (1.6) |
A | F_UNCLASSIFIED | e6b6vA1 | A: few secondary structure elements | X: Fe-binding domain in prismane-like proteins (From Topology) | H: Fe-binding domain in prismane-like proteins (From Topology) | T: Fe-binding domain in prismane-like proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF03063 | e6b6vB2 | A: alpha bundles | X: Helical bundle domain in prismane-like proteins (From Topology) | H: Helical bundle domain in prismane-like proteins (From Topology) | T: Helical bundle domain in prismane-like proteins | F: PF03063 | ECOD (1.6) |
B | PF03063 | e6b6vB3 | A: a/b three-layered sandwiches | X: Rossmann-like domain in prismane-like proteins (From Topology) | H: Rossmann-like domain in prismane-like proteins (From Topology) | T: Rossmann-like domain in prismane-like proteins | F: PF03063 | ECOD (1.6) |
B | F_UNCLASSIFIED | e6b6vB1 | A: few secondary structure elements | X: Fe-binding domain in prismane-like proteins (From Topology) | H: Fe-binding domain in prismane-like proteins (From Topology) | T: Fe-binding domain in prismane-like proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.1270.30 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
A | 3.40.50.2030 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
B | 1.20.1270.30 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
B | 3.40.50.2030 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03063 | Prismane/CO dehydrogenase family (Prismane) | Prismane/CO dehydrogenase family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016099 | Prismane-like, alpha/beta-sandwich | Homologous Superfamily | |
IPR004137 | Hydroxylamine reductase/Ni-containing CO dehydrogenase | Family | |
IPR016101 | CO dehydrogenase, alpha-bundle | Homologous Superfamily | |
IPR010047 | Ni-containing CO dehydrogenase | Family | |
IPR011254 | Prismane-like superfamily | Homologous Superfamily |