6B5Q | pdb_00006b5q

DCN1 bound to 38

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	EF-hand	8055670	3001983	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	EF-hand	8055669	3001983	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	EF-hand	8055670	3001983	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	EF-hand	8055669	3001983	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Cullin_binding	e6b5qB2	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: Cullin_binding	ECOD (1.6)
B	KOG3077	e6b5qB1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: KOG3077	ECOD (1.6)
A	Cullin_binding	e6b5qA1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: Cullin_binding	ECOD (1.6)
A	KOG3077	e6b5qA2	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: KOG3077	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (4.3.0)
A	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF03556	Cullin binding (Cullin_binding)	Cullin binding	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth D], D [auth E]	Peptidomimetic Inhibitors DI-591	-	-	-
A, B	DCN1-like protein 1	protein binding binding ubiquitin-like protein binding ubiquitin-like protein conjugating enzyme binding enzyme binding ubiquitin conjugating enzyme binding cullin family protein binding	regulation of biological process regulation of cellular process regulation of protein modification process regulation of post-translational protein modification regulation of protein metabolic process biological regulation regulation of protein ubiquitination primary metabolic process regulation of macromolecule metabolic process regulation of primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process regulation of biological process regulation of cellular process regulation of protein modification process regulation of post-translational protein modification regulation of protein metabolic process biological regulation regulation of protein ubiquitination primary metabolic process regulation of macromolecule metabolic process regulation of primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of protein modification by small protein conjugation or removal protein modification process post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal protein neddylation regulation of protein neddylation positive regulation of protein metabolic process positive regulation of biological process positive regulation of post-translational protein modification positive regulation of metabolic process positive regulation of protein modification process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of protein modification by small protein conjugation or removal positive regulation of protein neddylation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR042460	DCN1-like, PONY binding domain	Homologous Superfamily
A, B	IPR009060	UBA-like superfamily	Homologous Superfamily
A, B	IPR005176	Potentiating neddylation domain	Domain
A, B	IPR014764	Defective-in-cullin neddylation protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q96GG9	breast cancer malignant mesothelioma osteosarcoma pituitary cancer sarcoidosis cancer myopathy ovarian cancer prostate carcinoma tuberculosis large cell medulloblastoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm rheumatoid arthritis

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C [auth D], D [auth E]	1XY
C [auth D], D [auth E]	2KY
C [auth D], D [auth E]	CZS	Parent Component: ALA
C [auth D], D [auth E]	MLY	Parent Component: LYS RESID: AA0075 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084
C [auth D], D [auth E]	PPI	RESID: AA0075 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.