6B2Z | pdb_00006b2z

Cryo-EM structure of the dimeric FO region of yeast mitochondrial ATP synthase


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
N [auth d]e6b2zd01 A: alpha bundlesX: Rossmann-likeH: P-loop domains-relatedT: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinaseF:ECOD (develop294)
EA [auth M]e6b2zM1 A: alpha bundlesX: Phosphorylase/hydrolase-likeH: Nucleic acid-binding proteinT: Nucleic acid-binding proteinF:ECOD (develop294)
L [auth a]ATP-synt_Ae6b2za1 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: beta-propellerT: 7-bladedF: ATP-synt_AECOD (develop294)
A [auth 1]RRM_1e6b2z11 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
AA [auth J]RRM_1e6b2zJ1 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
B [auth 2]RRM_1e6b2z21 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
BA [auth K]RRM_1e6b2zK1 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
C [auth 3]RRM_1e6b2z31 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
D [auth 4]RRM_1e6b2z41 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
E [auth 5]RRM_1e6b2z51 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
F [auth 6]RRM_1e6b2z61 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
H [auth 8]RRM_1e6b2z81 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
I [auth 9]RRM_1e6b2z91 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
J [auth 0]RRM_1e6b2z01 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
T [auth C]RRM_1e6b2zC1 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
U [auth D]RRM_1e6b2zD1 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
V [auth E]RRM_1e6b2zE1 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
W [auth F]RRM_1e6b2zF1 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
X [auth G]RRM_1e6b2zG1 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
Y [auth H]RRM_1e6b2zH1 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
Z [auth I]RRM_1e6b2zI1 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
G [auth 7]RRM_1e6b2z71 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)
CA [auth B]RRM_1e6b2zB1 A: alpha bundlesX: SH3H: SH3T: SH3F: RRM_1ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth 1]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
AA [auth J]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
B [auth 2]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
BA [auth K]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
C [auth 3]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
D [auth 4]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
E [auth 5]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
F [auth 6]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
H [auth 8]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
I [auth 9]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
J [auth 0]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
T [auth C]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
U [auth D]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
V [auth E]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
W [auth F]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
X [auth G]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
Y [auth H]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
Z [auth I]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
G [auth 7]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)
CA [auth B]1.20.20.10 Mainly Alpha Up-down Bundle F1FO ATP Synthase F1F0 ATP synthase subunit CCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
FA [auth N],
M [auth b]
PF05405Mitochondrial ATP synthase B chain precursor (ATP-synt_B) (Mt_ATP-synt_B)Mitochondrial ATP synthase B chain precursor (ATP-synt_B)- Family
KA [auth S],
R [auth i]
PF04911ATP synthase j chain (ATP-synt_J)ATP synthase j chain- Family
EA [auth M],
L [auth a]
PF00119ATP synthase A chain (ATP-synt_A)ATP synthase A chainDomain
DA [auth L],
K [auth A]
PF00119ATP synthase A chain (ATP-synt_A)ATP synthase A chainDomain
DA [auth L],
K [auth A]
PF05933Fungal ATP synthase protein 8 (A6L) (Fun_ATP-synt_8)Fungal ATP synthase protein 8 (A6L)- Family
PF05405Mitochondrial ATP synthase B chain precursor (ATP-synt_B) (Mt_ATP-synt_B)Mitochondrial ATP synthase B chain precursor (ATP-synt_B)- Family
PF04911ATP synthase j chain (ATP-synt_J)ATP synthase j chain- Family
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
FA [auth N],
M [auth b]
ATP synthase subunit b
JA [auth R],
Q [auth g]
ATP synthase subunit g---
KA [auth S],
R [auth i]
ATP synthase subunit j, mitochondrial
IA [auth Q],
P [auth f]
ATP synthase subunit f, mitochondrial-
HA [auth P],
O [auth e]
ATP synthase subunit e, mitochondrial---
GA [auth O],
N [auth d]
ATP synthase subunit d, mitochondrial
EA [auth M],
L [auth a]
ATP synthase subunit a
DA [auth L],
K [auth A]
ATP synthase protein 8
LA [auth T],
S [auth k]
ATP synthase subunit k, mitochondrial-
ATP synthase subunit c, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
FA [auth N],
M [auth b]
IPR008688ATP synthase, F0 complex, subunit B/MI25Family
FA [auth N],
M [auth b]
IPR013837ATP synthase, F0 complex, subunit BFamily
KA [auth S],
R [auth i]
IPR006995ATP synthase, F0 complex, subunit JFamily
IA [auth Q],
P [auth f]
IPR019727ATP synthase, F0 complex, subunit F, mitochondria, fungiFamily
GA [auth O],
N [auth d]
IPR036228ATP synthase, F0 complex, subunit D superfamily, mitochondrialHomologous Superfamily
GA [auth O],
N [auth d]
IPR008689ATP synthase, F0 complex, subunit D, mitochondrialFamily
EA [auth M],
L [auth a]
IPR023011ATP synthase, F0 complex, subunit A, active siteActive Site
EA [auth M],
L [auth a]
IPR000568ATP synthase, F0 complex, subunit AFamily
EA [auth M],
L [auth a]
IPR035908ATP synthase, F0 complex, subunit A superfamilyHomologous Superfamily
EA [auth M],
L [auth a]
IPR045083ATP synthase, F0 complex, subunit A, bacterial/mitochondriaFamily
DA [auth L],
K [auth A]
IPR009230ATP synthase protein 8, fungal typeFamily
LA [auth T],
S [auth k]
IPR021278ATP synthase subunit KFamily
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR038662F1F0 ATP synthase subunit C superfamilyHomologous Superfamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding siteBinding Site
IPR000454ATP synthase, F0 complex, subunit CFamily