6AVW | pdb_00006avw

Crystal structure of Arabidopsis thaliana SOBER1 L63A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6avwa_	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	automated matches	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	alpha/beta-Hydrolases	8067293	3000102	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ATP-synt_Eps	e6avwA1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: ATP-synt_Eps	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Carboxylesterase SOBER1	phospholipase activity A2-type glycerophospholipase activity hydrolase activity, acting on ester bonds glycerophospholipase activity carboxylic ester hydrolase activity hydrolase activity catalytic activity lipase activity short-chain carboxylesterase activity carboxylesterase activity	cellular response to stimulus regulation of plant-type hypersensitive response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process response to stimulus regulation of response to external stimulus regulation of cellular response to stress regulation of programmed cell death response to biotic stimulus symbiont-induced defense-related programmed cell death cellular response to stress response to stress regulation of response to stress cellular response to stimulus regulation of plant-type hypersensitive response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process response to stimulus regulation of response to external stimulus regulation of cellular response to stress regulation of programmed cell death response to biotic stimulus symbiont-induced defense-related programmed cell death cellular response to stress response to stress regulation of response to stress plant-type hypersensitive response innate immune response regulation of immune system process response to external biotic stimulus regulation of biological process immune response response to other organism defense response regulation of innate immune response biological regulation defense response to symbiont response to external stimulus cell death regulation of response to stimulus immune system process defense response to other organism regulation of immune response cellular process programmed cell death fatty acid metabolic process oxoacid metabolic process carboxylic acid metabolic process primary metabolic process metabolic process small molecule metabolic process monocarboxylic acid metabolic process organic acid metabolic process lipid metabolic process phosphatidic acid biosynthetic process glycerophospholipid biosynthetic process phosphatidic acid metabolic process glycerophospholipid metabolic process lipid biosynthetic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process glycerolipid metabolic process phosphorus metabolic process defense response to bacterium response to bacterium	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR050565	Acyl-protein thioesterase 1-2/Carboxylesterase-like	Family
A	IPR003140	Phospholipase/carboxylesterase/thioesterase	Domain
A	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.