Annotations: 5ZYP

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TPR_11_9	e5zypA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: TPR_11_9	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03985	Paf1 (Paf1)	Paf1	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	RNA polymerase-associated protein CTR9,RNA polymerase II-associated protein 1	protein-containing complex binding chromatin binding binding basal transcription machinery binding RNA polymerase binding protein binding RNA polymerase II complex binding basal RNA polymerase II transcription machinery binding RNA polymerase core enzyme binding enzyme binding phosphoprotein binding RNA polymerase II C-terminal domain binding RNA polymerase II C-terminal domain phosphoserine binding phosphoserine residue binding protein-containing complex binding chromatin binding binding basal transcription machinery binding RNA polymerase binding protein binding RNA polymerase II complex binding basal RNA polymerase II transcription machinery binding RNA polymerase core enzyme binding enzyme binding phosphoprotein binding RNA polymerase II C-terminal domain binding RNA polymerase II C-terminal domain phosphoserine binding phosphoserine residue binding protein phosphorylated amino acid binding DNA binding organic cyclic compound binding triplex DNA binding nucleic acid binding transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding	negative regulation of cellular catabolic process catabolic process regulation of cellular process regulation of cellular component organization macroautophagy autophagy negative regulation of biological process regulation of autophagy negative regulation of cellular metabolic process cellular catabolic process cellular component organization mitophagy organelle disassembly negative regulation of cellular process negative regulation of cellular catabolic process catabolic process regulation of cellular process regulation of cellular component organization macroautophagy autophagy negative regulation of biological process regulation of autophagy negative regulation of cellular metabolic process cellular catabolic process cellular component organization mitophagy organelle disassembly negative regulation of cellular process regulation of autophagy of mitochondrion cellular component organization or biogenesis process utilizing autophagic mechanism mitochondrion organization cellular component disassembly negative regulation of catabolic process regulation of biological process negative regulation of cellular component organization cellular metabolic process negative regulation of metabolic process negative regulation of autophagy of mitochondrion biological regulation regulation of cellular metabolic process regulation of mitophagy regulation of catabolic process negative regulation of mitophagy regulation of organelle organization negative regulation of macroautophagy organelle organization regulation of macroautophagy negative regulation of organelle organization negative regulation of autophagy regulation of cellular catabolic process regulation of mitochondrion organization metabolic process cellular process regulation of metabolic process autophagy of mitochondrion cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II organic substance metabolic process sno(s)RNA metabolic process organic substance biosynthetic process sno(s)RNA transcription snoRNA transcription by RNA polymerase II primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process ncRNA metabolic process macromolecule metabolic process sno(s)RNA processing sno(s)RNA 3'-end processing nucleic acid catabolic process RNA 3'-end processing RNA processing positive regulation of macromolecule biosynthetic process regulation of primary metabolic process transcription elongation by RNA polymerase I positive regulation of metabolic process regulation of RNA metabolic process transcription by RNA polymerase I rRNA transcription positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of DNA-templated transcription elongation positive regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase I positive regulation of RNA metabolic process regulation of gene expression positive regulation of transcription elongation by RNA polymerase I regulation of macromolecule biosynthetic process regulation of DNA-templated transcription positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of cellular metabolic process positive regulation of DNA-templated transcription, elongation positive regulation of biosynthetic process rRNA metabolic process positive regulation of transcription by RNA polymerase I positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process nucleolar large rRNA transcription by RNA polymerase I regulation of macromolecule metabolic process regulation of cellular biosynthetic process DNA-templated transcription elongation regulation of transcription elongation by RNA polymerase I positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process DNA-templated transcription termination ribonucleoprotein complex biogenesis rRNA processing cellular component biogenesis ribosome biogenesis regulation of DNA recombination negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process DNA recombination DNA metabolic process negative regulation of DNA recombination negative regulation of DNA metabolic process regulation of DNA metabolic process cellular response to stimulus global genome nucleotide-excision repair response to stimulus cellular response to stress nucleotide-excision repair DNA damage response response to stress DNA repair mRNA 3'-end processing mRNA processing mRNA metabolic process transcription elongation by RNA polymerase II regulation of transcription by RNA polymerase II regulation of transcription elongation by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of transcription elongation by RNA polymerase II transcription-coupled nucleotide-excision repair regulation of cellular response to stress regulation of response to stress regulation of transcription-coupled nucleotide-excision repair regulation of DNA repair regulation of response to stimulus regulation of nucleotide-excision repair negative regulation of RNA biosynthetic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of cellular biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process negative regulation of biosynthetic process transcription by RNA polymerase III nucleolar chromatin organization protein-DNA complex organization chromatin organization chromatin remodeling rDNA heterochromatin formation heterochromatin formation protein-containing complex organization epigenetic regulation of gene expression negative regulation of gene expression nucleus organization nucleolus organization facultative heterochromatin formation negative regulation of gene expression, epigenetic regulation of DNA-templated transcription initiation transcription initiation at RNA polymerase II promoter DNA-templated transcription initiation regulation of transcription initiation by RNA polymerase II	membrane-bounded organelle RNA polymerase II, holoenzyme protein-containing complex intracellular anatomical structure transcription elongation factor complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle nucleoplasm catalytic complex intracellular membrane-bounded organelle membrane-bounded organelle RNA polymerase II, holoenzyme protein-containing complex intracellular anatomical structure transcription elongation factor complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle nucleoplasm catalytic complex intracellular membrane-bounded organelle cellular anatomical entity Cdc73/Paf1 complex transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex organelle lumen organelle RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex nuclear lumen protein-DNA complex euchromatin chromatin chromosome intracellular non-membrane-bounded organelle non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR007133	RNA polymerase II associated factor Paf1	Family
A	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A	IPR031101	RNA polymerase-associated protein Ctr9	Family
A	IPR019734	Tetratricopeptide repeat	Repeat

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.