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Data API
5ZWZ
|
pdb_00005zwz
Crystal structure of Arabidopsis thaliana AGDP1 AGD34
External Resource: Annotation
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
UNK_F_TYPE
e5zwzA2
A: beta barrels
X: SH3
H: SH3
T: SH3
F: UNK_F_TYPE
ECOD (1.6)
Domain Annotation: CATH
CATH Database Homepage
Chain
Domain
Class
Architecture
Topology
Homology
Provenance Source (Version)
A
2.30.30.140
Mainly Beta
Roll
SH3 type barrels.
CATH (utative)
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
PF05641
Agenet domain (Agenet)
Agenet domain
This domain is related to the TUDOR domain Pfam:PF00567 [1]. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins [1].
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
Agenet domain-containing protein
protein binding
binding
histone binding
histone reader activity
chromatin-protein adaptor activity
protein-macromolecule adaptor activity
molecular adaptor activity
regulation of cellular process
negative regulation of biological process
cellular component organization
cellular component biogenesis
cellular component assembly
chromatin organization
negative regulation of cellular process
chromatin remodeling
cellular component organization or biogenesis
negative regulation of macromolecule metabolic process
regulation of biosynthetic process
regulation of biological process
heterochromatin formation
epigenetic regulation of gene expression
regulation of cellular process
negative regulation of biological process
cellular component organization
cellular component biogenesis
cellular component assembly
chromatin organization
negative regulation of cellular process
chromatin remodeling
cellular component organization or biogenesis
negative regulation of macromolecule metabolic process
regulation of biosynthetic process
regulation of biological process
heterochromatin formation
epigenetic regulation of gene expression
negative regulation of metabolic process
biological regulation
heterochromatin organization
regulation of macromolecule metabolic process
gene expression
macromolecule biosynthetic process
regulation of gene expression
negative regulation of gene expression
constitutive heterochromatin formation
biosynthetic process
negative regulation of biosynthetic process
negative regulation of macromolecule biosynthetic process
DNA methylation-dependent constitutive heterochromatin formation
cellular process
negative regulation of gene expression, epigenetic
regulation of macromolecule biosynthetic process
metabolic process
macromolecule metabolic process
regulation of metabolic process
Less
intracellular organelle
cellular anatomical structure
intracellular anatomical structure
organelle
membraneless organelle
chromosome, centromeric region
intracellular membraneless organelle
chromosome
chromosomal region
chromatin
heterochromatin
membrane-bounded organelle
nucleus
intracellular membrane-bounded organelle
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR008395
Agenet-like domain
Domain
A
IPR014002
Agenet domain, plant type
Domain
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