5ZE3 | pdb_00005ze3

Crystal structure of human lysyl oxidase-like 2 (hLOXL2) in a precursor state

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	UNK_F_TYPE	e5ze3B3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UNK_F_TYPE	ECOD (1.6)
B	SRCR	e5ze3B1	A: a+b complex topology	X: SRCR-like	H: SRCR-like (From Topology)	T: SRCR-like	F: SRCR	ECOD (1.6)
A	UNK_F_TYPE	e5ze3A2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UNK_F_TYPE	ECOD (1.6)
A	SRCR	e5ze3A3	A: a+b complex topology	X: SRCR-like	H: SRCR-like (From Topology)	T: SRCR-like	F: SRCR	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.10.250.10	Alpha Beta	Roll	Mac-2 Binding Protein	SRCR-like domain	CATH (utative)
A	3.10.250.10	Alpha Beta	Roll	Mac-2 Binding Protein	SRCR-like domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01186	Lysyl oxidase (Lysyl_oxidase)	Lysyl oxidase	-	Family
A, B	PF00530	Scavenger receptor cysteine-rich domain (SRCR)	Scavenger receptor cysteine-rich domain	These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Lysyl oxidase homolog 2	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding transition metal ion binding copper ion binding oligosaccharide binding carbohydrate binding oxidoreductase activity, acting on the CH-NH2 group of donors oxidoreductase activity oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor catalytic activity, acting on a protein cation binding ion binding binding calcium ion binding metal ion binding small molecule binding transition metal ion binding copper ion binding oligosaccharide binding carbohydrate binding oxidoreductase activity, acting on the CH-NH2 group of donors oxidoreductase activity oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor catalytic activity, acting on a protein diamine oxidase activity protein-lysine 6-oxidase activity catalytic activity	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process cell population proliferation endothelial cell proliferation epithelial cell proliferation response to copper ion response to stimulus response to metal ion response to chemical macromolecule modification protein metabolic process protein modification process regulation of epithelial to mesenchymal transition multicellular organismal process regulation of developmental process cellular developmental process positive regulation of biological process positive regulation of epithelial to mesenchymal transition regulation of cell differentiation mesenchyme development positive regulation of developmental process positive regulation of cell differentiation cell differentiation anatomical structure development regulation of multicellular organismal process positive regulation of cellular process developmental process animal organ development tissue development epithelial to mesenchymal transition positive regulation of multicellular organismal process mesenchymal cell differentiation endothelial cell migration cell migration cell motility peptidyl-lysine modification peptidyl-lysine oxidation protein oxidation peptidyl-amino acid modification regulation of cartilage development regulation of chondrocyte differentiation connective tissue development positive regulation of chondrocyte differentiation multicellular organism development skeletal system development system development regulation of multicellular organismal development chondrocyte differentiation positive regulation of cartilage development cartilage development blood vessel morphogenesis tube development angiogenesis sprouting angiogenesis vasculature development circulatory system development anatomical structure morphogenesis tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development cellular component organization collagen fibril organization extracellular matrix organization cellular component organization or biogenesis extracellular structure organization external encapsulating structure organization chromatin organization heterochromatin organization response to decreased oxygen levels response to hypoxia response to stress response to oxygen levels response to abiotic stimulus negative regulation of developmental process regulation of stem cell population maintenance stem cell population maintenance negative regulation of stem cell population maintenance maintenance of cell number negative regulation of multicellular organismal process transcription by RNA polymerase II regulation of transcription by RNA polymerase II negative regulation of transcription by RNA polymerase II	cellular anatomical structure membrane basement membrane cell periphery extracellular matrix external encapsulating structure membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm cellular anatomical structure membrane basement membrane cell periphery extracellular matrix external encapsulating structure membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome extracellular region extracellular space endoplasmic reticulum cytoplasm endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR050912	Lysyl oxidase-like protein	Family
A, B	IPR019828	Lysyl oxidase, conserved site	Conserved Site
A, B	IPR001695	Lysyl oxidase	Family
A, B	IPR001190	SRCR domain	Domain
A, B	IPR036772	SRCR-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9Y4K0	primary biliary cholangitis Wilson disease esophageal squamous cell carcinoma hepatitis C virus infection Liver Cirrhosis, Experimental hepatitis B virus infection breast cancer breast carcinoma interstitial cystitis malignant glioma malignant pancreatic neoplasm adrenal cortex carcinoma medulloblastoma atypical teratoid rhabdoid tumor non-small cell lung carcinoma primary biliary cholangitis Wilson disease esophageal squamous cell carcinoma hepatitis C virus infection Liver Cirrhosis, Experimental hepatitis B virus infection breast cancer breast carcinoma interstitial cystitis malignant glioma malignant pancreatic neoplasm adrenal cortex carcinoma medulloblastoma atypical teratoid rhabdoid tumor non-small cell lung carcinoma pancreatic ductal adenocarcinoma esophageal adenocarcinoma transitional cell carcinoma Gaucher disease juvenile dermatomyositis lung cancer malignant mesothelioma age-related macular degeneration Becker muscular dystrophy osteosarcoma pilocytic astrocytoma cystic fibrosis primitive neuroectodermal tumor ulcerative colitis glioblastoma large cell medulloblastoma malignant ependymoma ovarian cancer polycystic ovary syndrome Duchenne muscular dystrophy sinusitis gastric carcinoma wet macular degeneration

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.