Annotations: 5ZDH

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2 Family	AspS-like	8088914	4004664	SCOP2 (2022-06-29)
P	SCOP2 Superfamily	AspS-like	8091942	3002548	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
AA [auth a]	T2SSS_2	e5zdha1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
BA [auth b]	T2SSS_2	e5zdhb1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
CA [auth c]	T2SSS_2	e5zdhc1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
DA [auth d]	T2SSS_2	e5zdhd1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
P	T2SSS_2	e5zdhP1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
Q	T2SSS_2	e5zdhQ1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
R	T2SSS_2	e5zdhR1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
S	T2SSS_2	e5zdhS1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
T	T2SSS_2	e5zdhT1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
U	T2SSS_2	e5zdhU1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
V	T2SSS_2	e5zdhV1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
W	T2SSS_2	e5zdhW1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
X	T2SSS_2	e5zdhX1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
Y	T2SSS_2	e5zdhY1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
Z	T2SSS_2	e5zdhZ1	A: a+b two layers	X: putative secreted protein PA3611 (From Topology)	H: putative secreted protein PA3611 (From Topology)	T: putative secreted protein PA3611	F: T2SSS_2	ECOD (1.6)
A	Secretin_N	e5zdhA3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
A	Secretin	e5zdhA1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)
B	Secretin_N	e5zdhB2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
B	Secretin	e5zdhB4	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)
C	Secretin_N	e5zdhC3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
C	Secretin	e5zdhC4	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)
D	Secretin_N	e5zdhD4	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
D	Secretin	e5zdhD1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)
E	Secretin_N	e5zdhE4	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
E	Secretin	e5zdhE3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)
F	Secretin_N	e5zdhF3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
F	Secretin	e5zdhF1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)
G	Secretin_N	e5zdhG1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
G	Secretin	e5zdhG4	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)
H	Secretin_N	e5zdhH2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
H	Secretin	e5zdhH4	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)
I	Secretin_N	e5zdhI3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
I	Secretin	e5zdhI2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)
J	Secretin_N	e5zdhJ1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
J	Secretin	e5zdhJ3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)
K	Secretin_N	e5zdhK1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
K	Secretin	e5zdhK4	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)
L	Secretin_N	e5zdhL3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
L	Secretin	e5zdhL2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)
M	Secretin_N	e5zdhM4	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
M	Secretin	e5zdhM1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)
N	Secretin_N	e5zdhN3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
N	Secretin	e5zdhN1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)
O	Secretin_N	e5zdhO2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin_N	ECOD (1.6)
O	Secretin	e5zdhO1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: Secretin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
B	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
C	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
D	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
E	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
F	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
G	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
H	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
I	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
J	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
K	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
L	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
M	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
N	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
O	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, Q, R, S, T, U, V, W, X, Y, Z	PF16549	Type II secretion system (T2SS) pilotin, S protein (T2SSS_2)	Type II secretion system (T2SS) pilotin, S protein	T2S_S is the S protein or pilotin of the bacterial Gram-negative secretion system in Vibrio and some E.coli and Shigella. It is given the suffix _2 to distinguish it from the PulS_OutS family of pilotins from Klebsiella and Dickeya, etc. AspS is func ...	T2S_S is the S protein or pilotin of the bacterial Gram-negative secretion system in Vibrio and some E.coli and Shigella. It is given the suffix _2 to distinguish it from the PulS_OutS family of pilotins from Klebsiella and Dickeya, etc. AspS is functionally equivalent and yet structurally unrelated to the pilotins found in Klebsiella and other bacteria. AspS binds to a specific targeting sequence in the Vibrio-type secretins, enhancing the kinetics of secretin assembly; homologues of AspS are found in all species of Vibrio as well those few strains of Escherichia and Shigella that have acquired a Vibrio-type T2SS. PulS is the Kelbsiella pilotin, found in PulS_OutS, Pfam:PF09691. Not all species with a type II secretion system have this pilotin or S protein.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	PF03958	Bacterial type II/III secretion system short domain (Secretin_N)	Bacterial type II/III secretion system short domain	This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	PF00263	Bacterial type II and III secretion system protein (Secretin)	Bacterial type II and III secretion system protein	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	PF16549	Type II secretion system (T2SS) pilotin, S protein (T2SSS_2)	Type II secretion system (T2SS) pilotin, S protein	T2S_S is the S protein or pilotin of the bacterial Gram-negative secretion system in Vibrio and some E.coli and Shigella. It is given the suffix _2 to distinguish it from the PulS_OutS family of pilotins from Klebsiella and Dickeya, etc. AspS is func ...	T2S_S is the S protein or pilotin of the bacterial Gram-negative secretion system in Vibrio and some E.coli and Shigella. It is given the suffix _2 to distinguish it from the PulS_OutS family of pilotins from Klebsiella and Dickeya, etc. AspS is functionally equivalent and yet structurally unrelated to the pilotins found in Klebsiella and other bacteria. AspS binds to a specific targeting sequence in the Vibrio-type secretins, enhancing the kinetics of secretin assembly; homologues of AspS are found in all species of Vibrio as well those few strains of Escherichia and Shigella that have acquired a Vibrio-type T2SS. PulS is the Kelbsiella pilotin, found in PulS_OutS, Pfam:PF09691. Not all species with a type II secretion system have this pilotin or S protein.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, Q, R, S, T, U, V, W, X, Y, Z	Type II secretion system lipoprotein	-	-	cell periphery cell outer membrane cellular anatomical structure external encapsulating structure membrane cell envelope outer membrane
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	Type II secretion system protein D	-	protein transport across the cell outer membrane establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport across the cell outer membrane establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization	protein-containing complex type II protein secretion system complex cell periphery cell outer membrane cellular anatomical structure external encapsulating structure membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, Q, R, S, T, U, V, W, X, Y, Z	IPR016502	Type II secretion system (T2SS) pilotin, S protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR050810	Bacterial Secretion System Channel Protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR005644	NolW-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR004846	Type II/III secretion system, secretin-like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR038591	NolW-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR049371	GspD-like, N0 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR001775	GspD/PilQ family	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR013356	Type II secretion system protein GspD	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, AA [auth a], B, BA [auth b], C A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	OPM	Transmembrane	Beta-barrel transmembrane	Outer bacterial membrane secretin	Outer bacterial membrane secretion

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, AA [auth a], B, BA [auth b], C A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	PDBTM	Annotated as membrane protein by PDBTM