Annotations: 5ZDH

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2 Family	AspS-like	8088914	4004664	SCOP2 (2022-06-29)
P	SCOP2 Superfamily	AspS-like	8091942	3002548	SCOP2 (2022-06-29)
O	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Secretin repeat domain-like	8057180	3002387	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z	zf-C3HC4_5	e5zdhZ1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
Y	zf-C3HC4_5	e5zdhY1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
X	zf-C3HC4_5	e5zdhX1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
W	zf-C3HC4_5	e5zdhW1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
V	zf-C3HC4_5	e5zdhV1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
U	zf-C3HC4_5	e5zdhU1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
T	zf-C3HC4_5	e5zdhT1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
S	zf-C3HC4_5	e5zdhS1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
R	zf-C3HC4_5	e5zdhR1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
Q	zf-C3HC4_5	e5zdhQ1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
P	Acetyltransf_3	e5zdhP1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Acetyltransf_3	ECOD (v294.1)
DA [auth d]	zf-C3HC4_5	e5zdhd1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
CA [auth c]	zf-C3HC4_5	e5zdhc1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
BA [auth b]	zf-C3HC4_5	e5zdhb1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
AA [auth a]	zf-C3HC4_5	e5zdha1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
O	zf-C3HC4_5	e5zdhO1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
N	zf-C3HC4_5	e5zdhN1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
M	zf-C3HC4_5	e5zdhM1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
L	zf-C3HC4_5	e5zdhL1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
K	zf-C3HC4_5	e5zdhK1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
J	zf-C3HC4_5	e5zdhJ1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
I	zf-C3HC4_5	e5zdhI1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
H	zf-C3HC4_5	e5zdhH1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
G	zf-C3HC4_5	e5zdhG1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
F	zf-C3HC4_5	e5zdhF1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
E	zf-C3HC4_5	e5zdhE1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
D	zf-C3HC4_5	e5zdhD1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
C	zf-C3HC4_5	e5zdhC1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
B	zf-C3HC4_5	e5zdhB1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: zf-C3HC4_5	ECOD (v294.1)
A	Acetyltransf_3	e5zdhA1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Acetyltransf_3	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
O	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
N	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
M	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
L	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
K	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
J	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
I	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
H	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
G	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
F	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
E	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
D	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
C	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
B	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)
A	3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8	Chain: A, domain 1	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, Q, R, S, T, U, V, W, X, Y, Z	Type II secretion system lipoprotein	-	-	cell outer membrane cellular anatomical structure external encapsulating structure extracellular region membrane cell envelope outer membrane
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	Type II secretion system protein D	identical protein binding protein binding binding	protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization	protein-containing complex type II protein secretion system complex cell outer membrane cellular anatomical structure external encapsulating structure extracellular region membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, Q, R, S, T, U, V, W, X, Y, Z	IPR016502	Type II secretion system (T2SS) pilotin, S protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR050810	Bacterial Secretion System Channel Protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR005644	NolW-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR004846	Type II/III secretion system, secretin-like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR038591	NolW-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR049371	GspD-like, N0 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR001775	GspD/PilQ family	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR013356	Type II secretion system protein GspD	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, AA [auth a], B, BA [auth b], C A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	OPM	Transmembrane	Beta-barrel transmembrane	Outer bacterial membrane secretin	Outer bacterial membrane secretion

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, AA [auth a], B, BA [auth b], C A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	PDBTM	Annotated as membrane protein by PDBTM