5YZV | pdb_00005yzv

Biophysical and structural characterization of the thermostable WD40 domain of a prokaryotic protein, Thermomonospora curvata PkwA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d5yzve_	All beta proteins	7-bladed beta-propeller	WD40 repeat-like	automated matches	automated matches	(Thermomonospora curvata ) [TaxId: 2020 ],	SCOPe (2.08)
D	d5yzvd_	All beta proteins	7-bladed beta-propeller	WD40 repeat-like	automated matches	automated matches	(Thermomonospora curvata ) [TaxId: 2020 ],	SCOPe (2.08)
C	d5yzvc_	All beta proteins	7-bladed beta-propeller	WD40 repeat-like	automated matches	automated matches	(Thermomonospora curvata ) [TaxId: 2020 ],	SCOPe (2.08)
B	d5yzvb_	All beta proteins	7-bladed beta-propeller	WD40 repeat-like	automated matches	automated matches	(Thermomonospora curvata ) [TaxId: 2020 ],	SCOPe (2.08)
A	d5yzva_	All beta proteins	7-bladed beta-propeller	WD40 repeat-like	automated matches	automated matches	(Thermomonospora curvata ) [TaxId: 2020 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	WD40 repeat-like	8106392	3001694	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	WD40 repeat-like	8106392	3001694	SCOP2B (2022-06-29)
C	SCOP2 Family	Cell division cycle protein 20 homolog (CDC20)-like	8084715	4005944	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	WD40 repeat-like	8106392	3001694	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	WD40 repeat-like	8106392	3001694	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	WD40 repeat-like	8106392	3001694	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	Chlorophyllase2	e5yzvE1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Chlorophyllase2	ECOD (v294.1)
D	Chlorophyllase2	e5yzvD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Chlorophyllase2	ECOD (v294.1)
C	Chlorophyllase2	e5yzvC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Chlorophyllase2	ECOD (v294.1)
B	Chlorophyllase2	e5yzvB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Chlorophyllase2	ECOD (v294.1)
A	Peptidase_C12	e5yzvA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: ADP-ribosylation	T: ADP-ribosylation	F: Peptidase_C12	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	Probable serine/threonine-protein kinase PkwA	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein serine kinase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR017441	Protein kinase, ATP binding site	Binding Site
A, B, C, D, E	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
A, B, C, D, E	IPR001680	WD40 repeat	Repeat
A, B, C, D, E	IPR000719	Protein kinase domain	Domain
A, B, C, D, E	IPR019775	WD40 repeat, conserved site	Conserved Site
A, B, C, D, E	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, B, C, D, E	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, B, C, D, E	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, B, C, D, E	IPR008271	Serine/threonine-protein kinase, active site	Active Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.