5YVG | pdb_00005yvg

Crystal structure of Karyopherin beta2 in complex with FUS(full length)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	ARM repeat-like	8038551	3000116	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ARM repeat-like	8038551	3000116	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	VP4_haemagglut	e5yvgB1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: VP4_haemagglut	ECOD (v294.1)
A	V-set	e5yvgA1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Ribosomal protein S5 domain 2-like	T: Ribosomal protein S5 domain 2-like	F: V-set	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF25574	Importin subunit beta-1-like, TPR repeats (TPR_IMB1)	Importin subunit beta-1-like, TPR repeats	-	Repeat
A, B	PF25780	IPO5-like, TPR repeats (TPR_IPO5)	IPO5-like, TPR repeats	-	Repeat
A, B	PF03810	Importin-beta N-terminal domain (IBN_N)	Importin-beta N-terminal domain	-	Repeat
A, B	PF13513	HEAT-like repeat (HEAT_EZ)	HEAT-like repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth X], D [auth Y]	RNA-binding protein FUS	transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity chromatin binding binding molecular condensate scaffold activity transcription coactivator activity mRNA 3'-UTR binding RNA binding nucleic acid binding mRNA binding DNA binding cation binding transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity chromatin binding binding molecular condensate scaffold activity transcription coactivator activity mRNA 3'-UTR binding RNA binding nucleic acid binding mRNA binding DNA binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding identical protein binding protein binding	cellular component organization metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process cellular component organization or biogenesis supramolecular fiber organization amyloid fibril formation regulation of cellular process negative regulation of biological process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process cellular component organization metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process cellular component organization or biogenesis supramolecular fiber organization amyloid fibril formation regulation of cellular process negative regulation of biological process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA stabilization mRNA catabolic process regulation of biological process negative regulation of metabolic process nucleobase-containing compound catabolic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process regulation of macromolecule biosynthetic process regulation of metabolic process negative regulation of RNA metabolic process catabolic process positive regulation of biological process RNA metabolic process macromolecule catabolic process negative regulation of mRNA metabolic process regulation of mRNA catabolic process positive regulation of biosynthetic process negative regulation of cellular process positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of catabolic process biological regulation negative regulation of mRNA catabolic process negative regulation of RNA catabolic process regulation of macromolecule metabolic process regulation of catabolic process gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process regulation of mRNA stability RNA stabilization negative regulation of biosynthetic process positive regulation of gene expression regulation of RNA stability regulation of mRNA metabolic process RNA splicing nucleobase-containing compound biosynthetic process RNA biosynthetic process nucleic acid biosynthetic process RNA processing cellular response to stimulus regulation of DNA recombination response to stimulus regulation of double-strand break repair regulation of cellular response to stress positive regulation of double-strand break repair via homologous recombination positive regulation of response to stimulus positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress recombinational repair double-strand break repair via homologous recombination DNA repair positive regulation of DNA recombination double-strand break repair DNA recombination DNA metabolic process positive regulation of double-strand break repair regulation of DNA repair regulation of double-strand break repair via homologous recombination positive regulation of DNA metabolic process DNA damage response regulation of response to stimulus regulation of DNA metabolic process DNA-templated transcription regulation of RNA biosynthetic process regulation of DNA-templated transcription transcription by RNA polymerase II regulation of transcription by RNA polymerase II cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization regulation of RNA splicing organelle organization organelle assembly membraneless organelle assembly	presynapse presynaptic cytosol cellular anatomical structure intracellular anatomical structure synapse cell junction cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle presynapse presynaptic cytosol cellular anatomical structure intracellular anatomical structure synapse cell junction cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen GABA-ergic synapse glutamatergic synapse postsynapse postsynaptic cytosol
A, B	Transportin-1	small GTPase binding protein binding binding enzyme binding GTPase binding nuclear import signal receptor activity nucleocytoplasmic carrier activity molecular carrier activity RNA binding nucleic acid binding nuclear localization sequence binding signal sequence binding peptide binding	establishment of protein localization cellular localization nucleocytoplasmic transport transport nuclear transport intracellular transport protein localization to nucleus establishment of localization localization import into nucleus establishment of protein localization to organelle protein transport establishment of localization in cell macromolecule localization protein localization to organelle establishment of protein localization cellular localization nucleocytoplasmic transport transport nuclear transport intracellular transport protein localization to nucleus establishment of localization localization import into nucleus establishment of protein localization to organelle protein transport establishment of localization in cell macromolecule localization protein localization to organelle protein import into nucleus cellular process intracellular protein localization intracellular protein transport	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle organelle lumen membraneless organelle nuclear lumen extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cytoplasm cytosol nucleoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth X], D [auth Y]	IPR034870	TAF15/EWS/TLS family	Family
C [auth X], D [auth Y]	IPR036443	Zinc finger, RanBP2-type superfamily	Homologous Superfamily
C [auth X], D [auth Y]	IPR000504	RNA recognition motif domain	Domain
C [auth X], D [auth Y]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
C [auth X], D [auth Y]	IPR001876	Zinc finger, RanBP2-type	Domain
C [auth X], D [auth Y]	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
A, B	IPR040122	Importin beta family	Family
A, B	IPR057672	IPO4/5-like, TPR repeats domain	Domain
A, B	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B	IPR058584	Importin subunit beta-1/Transportin-1-like, TPR repeats	Domain
A, B	IPR001494	Importin-beta, N-terminal domain	Domain
A, B	IPR011989	Armadillo-like helical	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth X], D [auth Y]	Pharos: P35637	amyotrophic lateral sclerosis myxoid liposarcoma amyotrophic lateral sclerosis type 6 tremor, hereditary essential, 4 neurodegenerative disease juvenile amyotrophic lateral sclerosis Ewing sarcoma large cell medulloblastoma malignant ependymoma osteosarcoma acute myeloid leukemia pancreatic intraductal papillary-mucinous carcinoma AMYOTROPHIC LATERAL SCLEROSIS 6 (disorder) plasma cell myeloma astrocytic tumor amyotrophic lateral sclerosis myxoid liposarcoma amyotrophic lateral sclerosis type 6 tremor, hereditary essential, 4 neurodegenerative disease juvenile amyotrophic lateral sclerosis Ewing sarcoma large cell medulloblastoma malignant ependymoma osteosarcoma acute myeloid leukemia pancreatic intraductal papillary-mucinous carcinoma AMYOTROPHIC LATERAL SCLEROSIS 6 (disorder) plasma cell myeloma astrocytic tumor subependymal giant cell astrocytoma dementia Graves disease histiocytoma, Angiomatoid fibrous ovarian cancer adrenal cortex carcinoma pancreatic intraductal papillary-mucinous neoplasm psoriasis brain disease systemic lupus erythematosus essential tremor frontotemporal dementia with motor neuron disease Hashimoto thyroiditis lymphoplasmacytic lymphoma medulloblastoma oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Sjogren syndrome cancer gastric carcinoma hepatocellular carcinoma
A, B	Pharos: Q92973	malignant pancreatic neoplasm non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm acne pilocytic astrocytoma atopic eczema psoriasis chronic obstructive pulmonary disease subependymal giant cell astrocytoma esophageal adenocarcinoma hepatocellular carcinoma large cell medulloblastoma malignant ependymoma medulloblastoma malignant pancreatic neoplasm non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm acne pilocytic astrocytoma atopic eczema psoriasis chronic obstructive pulmonary disease subependymal giant cell astrocytoma esophageal adenocarcinoma hepatocellular carcinoma large cell medulloblastoma malignant ependymoma medulloblastoma oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Alzheimer disease plasma cell myeloma atrial fibrillation rheumatoid arthritis Crohn disease tuberculosis exocrine pancreatic carcinoma invasive ductal breast carcinoma lung cancer malignant glioma myopathy osteosarcoma pancreatic intraductal papillary-mucinous carcinoma Pick disease astrocytic tumor primitive neuroectodermal tumor atypical teratoid rhabdoid tumor Sjogren syndrome dermatomyositis ulcerative colitis glioblastoma juvenile dermatomyositis lymphoplasmacytic lymphoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.