5YLG | pdb_00005ylg

Crystal Structure of LysM domain from pteris ryukyuensis chitinase A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5ylgd_	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Pteris ryukyuensis ) [TaxId: 367335 ],	SCOPe (2.08)
C	d5ylgc_	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Pteris ryukyuensis ) [TaxId: 367335 ],	SCOPe (2.08)
B	d5ylgb_	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Pteris ryukyuensis ) [TaxId: 367335 ],	SCOPe (2.08)
A	d5ylga_	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Pteris ryukyuensis ) [TaxId: 367335 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	LysM domain-like	8076157	3001938	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	LysM domain-like	8076157	3001938	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	LysM domain-like	8076157	3001938	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	LysM domain-like	8076157	3001938	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Transglut_prok	e5ylgD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Transglut_prok	ECOD (v294.1)
C	Tyrosinase	e5ylgC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Tyrosinase	ECOD (v294.1)
B	Tyrosinase	e5ylgB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Tyrosinase	ECOD (v294.1)
A	Tyrosinase	e5ylgA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Tyrosinase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.10.350.10	Alpha Beta	Roll	Membrane-bound Lytic Murein Transglycosylase D	Chain A	CATH (4.3.0)
C	3.10.350.10	Alpha Beta	Roll	Membrane-bound Lytic Murein Transglycosylase D	Chain A	CATH (4.3.0)
B	3.10.350.10	Alpha Beta	Roll	Membrane-bound Lytic Murein Transglycosylase D	Chain A	CATH (4.3.0)
A	3.10.350.10	Alpha Beta	Roll	Membrane-bound Lytic Murein Transglycosylase D	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Chitinase A	hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR000677	Chitinase-like	Family
A, B, C, D	IPR036779	LysM domain superfamily	Homologous Superfamily
A, B, C, D	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, B, C, D	IPR001579	Glycosyl hydrolase family 18, active site	Active Site
A, B, C, D	IPR018392	LysM domain	Domain
A, B, C, D	IPR001223	Glycoside hydrolase family 18, catalytic domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.