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 5YKB | pdb_00005ykb

The N253F mutant structure of trehalose synthase from Deinococcus radiodurans reveals an open active-site conformation

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8100994 3001528 SCOP2B (2022-06-29)
DSCOP2B Superfamily(Trans)glycosidases 8097952 3000313 SCOP2B (2022-06-29)
CSCOP2B Superfamily(Trans)glycosidases 8097952 3000313 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8100994 3001528 SCOP2B (2022-06-29)
BSCOP2B Superfamily(Trans)glycosidases 8097952 3000313 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8100994 3001528 SCOP2B (2022-06-29)
ASCOP2B Superfamily(Trans)glycosidases 8097952 3000313 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyGlycosyl hydrolase domain-like 8100994 3001528 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DSBP_bac_1e5ykbD1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: SBP_bac_1ECOD (v295.2)
CSBP_bac_1e5ykbC1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: SBP_bac_1ECOD (v295.2)
BSBP_bac_1e5ykbB1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: SBP_bac_1ECOD (v295.2)
ASBP_bac_1e5ykbA1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: SBP_bac_1ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
D2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)
C3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
C2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)
B3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
B2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)
A3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
A2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Trehalose synthase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR045857Oligo-1,6-glucosidase, domain 2Homologous Superfamily
A, B, C, D
IPR032091Maltogenic amylase-like, C-terminalDomain
A, B, C, D
IPR006047Glycosyl hydrolase family 13, catalytic domainDomain
A, B, C, D
IPR017853Glycoside hydrolase superfamilyHomologous Superfamily
A, B, C, D
IPR012810Trehalose synthase/alpha-amylase, N-terminalDomain
A, B, C, D
IPR013780Glycosyl hydrolase, all-betaHomologous Superfamily