5Y7O | pdb_00005y7o

Crystal structure of folding sensor region of UGGT from Thermomyces dupontii

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	UNK_F_TYPE	e5y7oB5	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: UNK_F_TYPE	ECOD (1.6)
B	UDP-g_GGTase	e5y7oB2	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: UDP-g_GGTase	ECOD (1.6)
B	UNK_F_TYPE	e5y7oB1	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e5y7oA4	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: UNK_F_TYPE	ECOD (1.6)
A	UDP-g_GGTase	e5y7oA5	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: UDP-g_GGTase	ECOD (1.6)
A	UNK_F_TYPE	e5y7oA3	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF18400	Thioredoxin-like domain (Thioredoxin_12)	Thioredoxin-like domain	This is one of four TRXL(thioredoxin-like) domains found in UDP-glucose:glycoprotein glucosyltransferase (UGGT)[1].	Domain
A, B	PF18403	Thioredoxin-like domain (Thioredoxin_15)	Thioredoxin-like domain	This is the fourth TRXL(thioredoxin-like) domain found in UDP-glucose:glycoprotein glucosyltransferase (UGGT)[1].	Domain
A, B	PF18402	Thioredoxin-like domain (Thioredoxin_14)	Thioredoxin-like domain	This is the third out of four TRXL(thioredoxin-like) domains found in UDP-glucose:glycoprotein glucosyltransferase (UGGT)[1].	Domain
A, B	PF06427	UDP-glucose:Glycoprotein Glucosyltransferase (UDP-g_GGTase)	UDP-glucose:Glycoprotein Glucosyltransferase	This domain consists of 7 stranded beta-sandwiches found in UDP-glucose-glycoprotein glucosyltransferase-like proteins [1]. UDP-g_GGTase is an important, central component of the QC system in the ER for checking that glycoproteins are folded correctl ...	This domain consists of 7 stranded beta-sandwiches found in UDP-glucose-glycoprotein glucosyltransferase-like proteins [1]. UDP-g_GGTase is an important, central component of the QC system in the ER for checking that glycoproteins are folded correctly. This QC prevents incorrectly folded glycoproteins from leaving the ER [2,3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	UGGT	unfolded protein binding protein binding binding UDP-glycosyltransferase activity glycosyltransferase activity transferase activity glucosyltransferase activity hexosyltransferase activity catalytic activity UDP-glucose:glycoprotein glucosyltransferase activity UDP-glucosyltransferase activity	cellular response to stimulus catabolic process response to stimulus proteolysis involved in protein catabolic process response to nitrogen compound proteasomal protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process ERAD pathway cellular response to stress response to chemical response to stress proteolysis cellular response to stimulus catabolic process response to stimulus proteolysis involved in protein catabolic process response to nitrogen compound proteasomal protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process ERAD pathway cellular response to stress response to chemical response to stress proteolysis cellular process metabolic process protein metabolic process macromolecule metabolic process response to endoplasmic reticulum stress carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process glycoprotein metabolic process protein N-linked glycosylation macromolecule biosynthetic process protein N-linked glycosylation via asparagine biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR040693	UGGT, thioredoxin-like domain 1	Domain
A, B	IPR040694	UGGT, thioredoxin-like domain 2	Domain
A, B	IPR040692	UGGT, thioredoxin-like domain 3	Domain
A, B	IPR009448	UDP-glucose:Glycoprotein Glucosyltransferase	Family
A, B	IPR040525	UDP-glucose:glycoprotein glucosyltransferase, thioredoxin-like domain 4	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.