5Y2Z | pdb_00005y2z

Crystal structure of human LGI1 EPTP-ADAM22 complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TBP	e5y2zA1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Ribosomal protein S5 domain 2-like	T: Ribosomal protein S5 domain 2-like	F: TBP	ECOD (v294.1)
B [auth C]	Reprolysin	e5y2zC1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Reprolysin	ECOD (v294.1)
C [auth E]	Reprolysin	e5y2zE1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Reprolysin	ECOD (v294.1)
F [auth K]	Reprolysin	e5y2zK1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Reprolysin	ECOD (v294.1)
E [auth I]	Reprolysin	e5y2zI1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Reprolysin	ECOD (v294.1)
D [auth G]	Reprolysin	e5y2zG1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Reprolysin	ECOD (v294.1)
H [auth D]	OCD_Mu_crystall	e5y2zD1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: OCD_Mu_crystall	ECOD (v294.1)
I [auth F]	OCD_Mu_crystall	e5y2zF1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: OCD_Mu_crystall	ECOD (v294.1)
K [auth J]	OCD_Mu_crystall	e5y2zJ1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: OCD_Mu_crystall	ECOD (v294.1)
L	OCD_Mu_crystall	e5y2zL1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: OCD_Mu_crystall	ECOD (v294.1)
J [auth H]	OCD_Mu_crystall	e5y2zH1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: OCD_Mu_crystall	ECOD (v294.1)
G [auth B]	OCD_Mu_crystall	e5y2zB1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: OCD_Mu_crystall	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.390.10	Alpha Beta	3-Layer(aba) Sandwich	Collagenase (Catalytic Domain)	Collagenase (Catalytic Domain)	CATH (4.3.0)
A	4.10.70.10	Few Secondary Structures	Irregular	Echistatin	Disintegrin domain	CATH (4.3.0)
B [auth C]	3.40.390.10	Alpha Beta	3-Layer(aba) Sandwich	Collagenase (Catalytic Domain)	Collagenase (Catalytic Domain)	CATH (4.3.0)
B [auth C]	4.10.70.10	Few Secondary Structures	Irregular	Echistatin	Disintegrin domain	CATH (4.3.0)
C [auth E]	3.40.390.10	Alpha Beta	3-Layer(aba) Sandwich	Collagenase (Catalytic Domain)	Collagenase (Catalytic Domain)	CATH (4.3.0)
C [auth E]	4.10.70.10	Few Secondary Structures	Irregular	Echistatin	Disintegrin domain	CATH (4.3.0)
F [auth K]	3.40.390.10	Alpha Beta	3-Layer(aba) Sandwich	Collagenase (Catalytic Domain)	Collagenase (Catalytic Domain)	CATH (4.3.0)
F [auth K]	4.10.70.10	Few Secondary Structures	Irregular	Echistatin	Disintegrin domain	CATH (4.3.0)
E [auth I]	3.40.390.10	Alpha Beta	3-Layer(aba) Sandwich	Collagenase (Catalytic Domain)	Collagenase (Catalytic Domain)	CATH (4.3.0)
E [auth I]	4.10.70.10	Few Secondary Structures	Irregular	Echistatin	Disintegrin domain	CATH (4.3.0)
D [auth G]	3.40.390.10	Alpha Beta	3-Layer(aba) Sandwich	Collagenase (Catalytic Domain)	Collagenase (Catalytic Domain)	CATH (4.3.0)
D [auth G]	4.10.70.10	Few Secondary Structures	Irregular	Echistatin	Disintegrin domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	PF08516	ADAM cysteine-rich (ADAM_CR)	ADAM cysteine-rich	-	Family
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	PF00200	Disintegrin (Disintegrin)	Disintegrin		Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	PF07974	EGF-like domain (EGF_2)	EGF-like domain	This family contains EGF domains found in a variety of extracellular proteins.	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	PF01421	Reprolysin (M12B) family zinc metalloprotease (Reprolysin)	Reprolysin (M12B) family zinc metalloprotease	The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. Members of this family are also known as adamalysins. Most members of this family are snake venom endopeptidases, but there are also some mammal ...	The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. Members of this family are also known as adamalysins. Most members of this family are snake venom endopeptidases, but there are also some mammalian proteins such as Swiss:P78325, and fertilin Swiss:Q28472. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes.	Domain
G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], L	PF03736	EPTP domain (EPTP)	EPTP domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	Disintegrin and metalloproteinase domain-containing protein 22	molecular transducer activity signaling receptor activity cell adhesion molecule binding protein-containing complex binding protein binding binding integrin binding signaling receptor binding peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity hydrolase activity metallopeptidase activity catalytic activity molecular transducer activity signaling receptor activity cell adhesion molecule binding protein-containing complex binding protein binding binding integrin binding signaling receptor binding peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity hydrolase activity metallopeptidase activity catalytic activity endopeptidase activity	developmental process multicellular organism development multicellular organismal process central nervous system development anatomical structure development nervous system development system development cell adhesion cellular process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process developmental process multicellular organism development multicellular organismal process central nervous system development anatomical structure development nervous system development system development cell adhesion cellular process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process positive regulation of cell communication trans-synaptic signaling regulation of signaling regulation of biological process regulation of cellular process signaling modulation of chemical synaptic transmission biological regulation positive regulation of biological process positive regulation of synaptic transmission cell-cell signaling cell communication chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication positive regulation of cellular process positive regulation of signaling regulation of cell adhesion negative regulation of cellular process negative regulation of biological process negative regulation of cell adhesion	postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic membrane asymmetric synapse plasma membrane region axon cell projection neuron projection plasma membrane bounded cell projection
G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], L	Leucine-rich glioma-inactivated protein 1	protein binding binding signaling receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity	protein localization to postsynaptic specialization membrane protein localization to postsynaptic membrane protein localization to cell periphery cellular localization protein localization to synapse biological regulation localization within membrane protein localization to membrane protein-containing complex localization neurotransmitter receptor localization to postsynaptic specialization membrane localization regulation of postsynaptic membrane neurotransmitter receptor levels macromolecule localization protein localization to organelle protein localization to postsynaptic specialization membrane protein localization to postsynaptic membrane protein localization to cell periphery cellular localization protein localization to synapse biological regulation localization within membrane protein localization to membrane protein-containing complex localization neurotransmitter receptor localization to postsynaptic specialization membrane localization regulation of postsynaptic membrane neurotransmitter receptor levels macromolecule localization protein localization to organelle cellular process protein localization to postsynapse intracellular protein localization regulation of biological quality protein localization to cell junction receptor localization to synapse regulation of growth regulation of biological process regulation of cellular process regulation of cellular component organization growth positive regulation of biological process positive regulation of cell growth regulation of cell growth cell growth cellular component organization positive regulation of growth cellular component organization or biogenesis positive regulation of cellular process multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development system development developmental process plasma membrane bounded cell projection organization axon guidance nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron projection guidance neuron development positive regulation of cell communication trans-synaptic signaling regulation of signaling signaling modulation of chemical synaptic transmission positive regulation of synaptic transmission cell-cell signaling cell communication chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication positive regulation of signaling	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system extracellular region synaptic cleft somatodendritic compartment cell projection dendrite membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system extracellular region synaptic cleft somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection axon main axon axon initial segment synapse cell junction glutamatergic synapse endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR034027	Reprolysin domain, adamalysin-type	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR024079	Metallopeptidase, catalytic domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR018358	Disintegrin, conserved site	Conserved Site
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR001762	Disintegrin domain	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR013111	Epidermal growth factor-like domain, extracellular	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR002870	Peptidase M12B, propeptide	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR001590	Peptidase M12B, ADAM/reprolysin	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR006586	ADAM, cysteine-rich domain	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR036436	Disintegrin domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	IPR000742	EGF-like domain	Domain
G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], L	IPR009039	EAR	Repeat
G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], L	IPR001611	Leucine-rich repeat	Repeat
G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], L	IPR003591	Leucine-rich repeat, typical subtype	Repeat
G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], L	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], L	IPR000483	Cysteine-rich flanking region, C-terminal	Domain
G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], L	IPR005492	Leucine-rich glioma-inactivated , EPTP repeat	Repeat
G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], L	IPR051295	Leucine-rich glioma-inactivated/LGI-related	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K]	Pharos: Q9P0K1	pilocytic astrocytoma psoriasis ulcerative colitis acute myeloid leukemia atypical teratoid rhabdoid tumor epilepsy large cell medulloblastoma malignant colon neoplasm malignant mesothelioma osteosarcoma pituitary cancer subependymal giant cell astrocytoma adrenal cortex carcinoma cutaneous lupus erythematosus glioblastoma pilocytic astrocytoma psoriasis ulcerative colitis acute myeloid leukemia atypical teratoid rhabdoid tumor epilepsy large cell medulloblastoma malignant colon neoplasm malignant mesothelioma osteosarcoma pituitary cancer subependymal giant cell astrocytoma adrenal cortex carcinoma cutaneous lupus erythematosus glioblastoma lung cancer malignant ependymoma medulloblastoma Pick disease primitive neuroectodermal tumor transitional cell carcinoma atopic eczema developmental and epileptic encephalopathy, 61 interstitial cystitis lung carcinoma malignant glioma nasopharyngeal carcinoma
G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], G [auth B], H [auth D], I [auth F], J [auth H], K [auth J], L	Pharos: O95970	Autosomal dominant epilepsy with auditory features epilepsy, familial temporal lobe, 1 malignant glioma epilepsy astrocytic tumor depressive disorder intellectual disability malignant colon neoplasm Mental Depression primitive neuroectodermal tumor atypical teratoid rhabdoid tumor encephalitis interstitial cystitis oligodendroglioma psoriasis Autosomal dominant epilepsy with auditory features epilepsy, familial temporal lobe, 1 malignant glioma epilepsy astrocytic tumor depressive disorder intellectual disability malignant colon neoplasm Mental Depression primitive neuroectodermal tumor atypical teratoid rhabdoid tumor encephalitis interstitial cystitis oligodendroglioma psoriasis glioblastoma large cell medulloblastoma medulloblastoma pilocytic astrocytoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.