Crystal structure of Deg9 at 295 K
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Trypsin_2 | e5y09B2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Trypsin_2 | ECOD (1.6) |
| B | PDZ_2 | e5y09B3 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ_2 | ECOD (1.6) |
| B | KOG1320 | e5y09B1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: KOG1320 | ECOD (1.6) |
| A | Trypsin_2 | e5y09A3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Trypsin_2 | ECOD (1.6) |
| A | PDZ_2 | e5y09A2 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ_2 | ECOD (1.6) |
| A | KOG1320 | e5y09A1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: KOG1320 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF13180 | PDZ domain (PDZ_2) | PDZ domain | Domain | ||
| PF17815 | PDZ domain (PDZ_3) | PDZ domain | This entry contains the second PDZ domain from plant peptidases such as Deg2 [1]. This domain is involved in cage assembly. | Domain | |
| PF13365 | Trypsin-like peptidase domain (Trypsin_2) | Trypsin-like peptidase domain | This family includes trypsin-like peptidase domains. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Protease Do-like 9 |
|
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR041517 | Protease Do-like, PDZ domain | Domain | |
| IPR046449 | Protease Do-like, PDZ domain superfamily | Homologous Superfamily | |
| IPR009003 | Peptidase S1, PA clan | Homologous Superfamily | |
| IPR001478 | PDZ domain | Domain | |
| IPR001940 | Peptidase S1C | Family | |
| IPR043504 | Peptidase S1, PA clan, chymotrypsin-like fold | Homologous Superfamily | |
| IPR036034 | PDZ superfamily | Homologous Superfamily |














