5XX1 | pdb_00005xx1

Crystal structure of Arginine decarboxylase (AdiA) from Salmonella typhimurium


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AVP4_haemagglute5xx1A1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-likeT: Peptidyl-tRNA hydrolase-likeF: VP4_haemagglutECOD (v294.1)
BV-sete5xx1B1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Ribosomal protein S5 domain 2-likeT: Ribosomal protein S5 domain 2-likeF: V-setECOD (v294.1)
CVP4_haemagglute5xx1C1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-likeT: Peptidyl-tRNA hydrolase-likeF: VP4_haemagglutECOD (v294.1)
DVP4_haemagglute5xx1D1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-likeT: Peptidyl-tRNA hydrolase-likeF: VP4_haemagglutECOD (v294.1)
EVP4_haemagglute5xx1E1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-likeT: Peptidyl-tRNA hydrolase-likeF: VP4_haemagglutECOD (v294.1)
FVP4_haemagglute5xx1F1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-likeT: Peptidyl-tRNA hydrolase-likeF: VP4_haemagglutECOD (v294.1)
GVP4_haemagglute5xx1G1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-likeT: Peptidyl-tRNA hydrolase-likeF: VP4_haemagglutECOD (v294.1)
HVP4_haemagglute5xx1H1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-likeT: Peptidyl-tRNA hydrolase-likeF: VP4_haemagglutECOD (v294.1)
IVP4_haemagglute5xx1I1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-likeT: Peptidyl-tRNA hydrolase-likeF: VP4_haemagglutECOD (v294.1)
JVP4_haemagglute5xx1J1 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-likeT: Peptidyl-tRNA hydrolase-likeF: VP4_haemagglutECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (4.3.0)
A3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
A3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
A3.90.100.10 Alpha Beta Alpha-Beta Complex Ornithine Decarboxylase Chain A, domain 4CATH (4.3.0)
B3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (4.3.0)
B3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
B3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
B3.90.100.10 Alpha Beta Alpha-Beta Complex Ornithine Decarboxylase Chain A, domain 4CATH (4.3.0)
C3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (4.3.0)
C3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
C3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
C3.90.100.10 Alpha Beta Alpha-Beta Complex Ornithine Decarboxylase Chain A, domain 4CATH (4.3.0)
D3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (4.3.0)
D3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
D3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
D3.90.100.10 Alpha Beta Alpha-Beta Complex Ornithine Decarboxylase Chain A, domain 4CATH (4.3.0)
E3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (4.3.0)
E3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
E3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
E3.90.100.10 Alpha Beta Alpha-Beta Complex Ornithine Decarboxylase Chain A, domain 4CATH (4.3.0)
F3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (4.3.0)
F3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
F3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
F3.90.100.10 Alpha Beta Alpha-Beta Complex Ornithine Decarboxylase Chain A, domain 4CATH (4.3.0)
G3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (4.3.0)
G3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
G3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
G3.90.100.10 Alpha Beta Alpha-Beta Complex Ornithine Decarboxylase Chain A, domain 4CATH (4.3.0)
H3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (4.3.0)
H3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
H3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
H3.90.100.10 Alpha Beta Alpha-Beta Complex Ornithine Decarboxylase Chain A, domain 4CATH (4.3.0)
I3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (4.3.0)
I3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
I3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
I3.90.100.10 Alpha Beta Alpha-Beta Complex Ornithine Decarboxylase Chain A, domain 4CATH (4.3.0)
J3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (4.3.0)
J3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
J3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
J3.90.100.10 Alpha Beta Alpha-Beta Complex Ornithine Decarboxylase Chain A, domain 4CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Arginine decarboxylase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR005308Orn/Lys/Arg decarboxylase, N-terminalDomain
A, B, C, D, E
IPR036633Orn/Lys/Arg decarboxylase, C-terminal domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR015424Pyridoxal phosphate-dependent transferaseHomologous Superfamily
A, B, C, D, E
IPR015421Pyridoxal phosphate-dependent transferase, major domainHomologous Superfamily
A, B, C, D, E
IPR015422Pyridoxal phosphate-dependent transferase, small domainHomologous Superfamily
A, B, C, D, E
IPR000310Orn/Lys/Arg decarboxylase, major domainDomain
A, B, C, D, E
IPR011193Ornithine/lysine/arginine decarboxylaseFamily
A, B, C, D, E
IPR008286Orn/Lys/Arg decarboxylase, C-terminalDomain