5XK9

Crystal structure of Isosesquilavandulyl Diphosphate Synthase from Streptomyces sp. strain CNH-189 in complex with GSPP and DMAPP

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5xk9a_	Alpha and beta proteins (a/b)	Undecaprenyl diphosphate synthase	Undecaprenyl diphosphate synthase	automated matches	automated matches	(Streptomyces sp. CNH189 ) [TaxId: 1136432 ],	SCOPe (2.08)
B	d5xk9b1	Alpha and beta proteins (a/b)	Undecaprenyl diphosphate synthase	Undecaprenyl diphosphate synthase	automated matches	automated matches	(Streptomyces sp. CNH189 ) [TaxId: 1136432 ],	SCOPe (2.08)
B	d5xk9b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces sp. CNH189 ) [TaxId: 1136432 ],	SCOPe (2.08)
C	d5xk9c1	Alpha and beta proteins (a/b)	Undecaprenyl diphosphate synthase	Undecaprenyl diphosphate synthase	automated matches	automated matches	(Streptomyces sp. CNH189 ) [TaxId: 1136432 ],	SCOPe (2.08)
C	d5xk9c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces sp. CNH189 ) [TaxId: 1136432 ],	SCOPe (2.08)
D	d5xk9d_	Alpha and beta proteins (a/b)	Undecaprenyl diphosphate synthase	Undecaprenyl diphosphate synthase	automated matches	automated matches	(Streptomyces sp. CNH189 ) [TaxId: 1136432 ],	SCOPe (2.08)
E	d5xk9e_	Alpha and beta proteins (a/b)	Undecaprenyl diphosphate synthase	Undecaprenyl diphosphate synthase	automated matches	automated matches	(Streptomyces sp. CNH189 ) [TaxId: 1136432 ],	SCOPe (2.08)
F	d5xk9f1	Alpha and beta proteins (a/b)	Undecaprenyl diphosphate synthase	Undecaprenyl diphosphate synthase	automated matches	automated matches	(Streptomyces sp. CNH189 ) [TaxId: 1136432 ],	SCOPe (2.08)
F	d5xk9f2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces sp. CNH189 ) [TaxId: 1136432 ],	SCOPe (2.08)
G	d5xk9g1	Alpha and beta proteins (a/b)	Undecaprenyl diphosphate synthase	Undecaprenyl diphosphate synthase	automated matches	automated matches	(Streptomyces sp. CNH189 ) [TaxId: 1136432 ],	SCOPe (2.08)
G	d5xk9g2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces sp. CNH189 ) [TaxId: 1136432 ],	SCOPe (2.08)
H	d5xk9h_	Alpha and beta proteins (a/b)	Undecaprenyl diphosphate synthase	Undecaprenyl diphosphate synthase	automated matches	automated matches	(Streptomyces sp. CNH189 ) [TaxId: 1136432 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Undecaprenyl diphosphate synthase	8067728	3000594	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Undecaprenyl diphosphate synthase	8067728	3000594	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Undecaprenyl diphosphate synthase	8067728	3000594	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Undecaprenyl diphosphate synthase	8067728	3000594	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Undecaprenyl diphosphate synthase	8067728	3000594	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Undecaprenyl diphosphate synthase	8067728	3000594	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Undecaprenyl diphosphate synthase	8067728	3000594	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Undecaprenyl diphosphate synthase	8067728	3000594	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01255	e5xk9A1	A: a/b three-layered sandwiches	X: Undecaprenyl diphosphate synthase (From Topology)	H: Undecaprenyl diphosphate synthase (From Topology)	T: Undecaprenyl diphosphate synthase	F: PF01255	ECOD (1.6)
B	PF01255	e5xk9B1	A: a/b three-layered sandwiches	X: Undecaprenyl diphosphate synthase (From Topology)	H: Undecaprenyl diphosphate synthase (From Topology)	T: Undecaprenyl diphosphate synthase	F: PF01255	ECOD (1.6)
C	PF01255	e5xk9C1	A: a/b three-layered sandwiches	X: Undecaprenyl diphosphate synthase (From Topology)	H: Undecaprenyl diphosphate synthase (From Topology)	T: Undecaprenyl diphosphate synthase	F: PF01255	ECOD (1.6)
D	PF01255	e5xk9D1	A: a/b three-layered sandwiches	X: Undecaprenyl diphosphate synthase (From Topology)	H: Undecaprenyl diphosphate synthase (From Topology)	T: Undecaprenyl diphosphate synthase	F: PF01255	ECOD (1.6)
E	PF01255	e5xk9E1	A: a/b three-layered sandwiches	X: Undecaprenyl diphosphate synthase (From Topology)	H: Undecaprenyl diphosphate synthase (From Topology)	T: Undecaprenyl diphosphate synthase	F: PF01255	ECOD (1.6)
F	PF01255	e5xk9F1	A: a/b three-layered sandwiches	X: Undecaprenyl diphosphate synthase (From Topology)	H: Undecaprenyl diphosphate synthase (From Topology)	T: Undecaprenyl diphosphate synthase	F: PF01255	ECOD (1.6)
G	PF01255	e5xk9G1	A: a/b three-layered sandwiches	X: Undecaprenyl diphosphate synthase (From Topology)	H: Undecaprenyl diphosphate synthase (From Topology)	T: Undecaprenyl diphosphate synthase	F: PF01255	ECOD (1.6)
H	PF01255	e5xk9H1	A: a/b three-layered sandwiches	X: Undecaprenyl diphosphate synthase (From Topology)	H: Undecaprenyl diphosphate synthase (From Topology)	T: Undecaprenyl diphosphate synthase	F: PF01255	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF01255	Putative undecaprenyl diphosphate synthase (Prenyltransf)	Putative undecaprenyl diphosphate synthase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Undecaprenyl diphosphate synthase	transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036424	Decaprenyl diphosphate synthase-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001441	Decaprenyl diphosphate synthase-like	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.