Annotations: 5XJG

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Arena_glycoprot	e5xjgC1	A: alpha bundles	X: Beta domain of coronavirus spike glycoprotein	H: HAMP domain	T: Polymerase basic protein 2 cap-binding domain	F: Arena_glycoprot	ECOD (develop294)
A	Arena_glycoprot	e5xjgA1	A: alpha bundles	X: Beta domain of coronavirus spike glycoprotein	H: HAMP domain	T: Polymerase basic protein 2 cap-binding domain	F: Arena_glycoprot	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF00514	Armadillo/beta-catenin-like repeat (Arm)	Armadillo/beta-catenin-like repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Nucleus-vacuole junction protein 1	structural molecule activity	cellular component biogenesis cellular component organization organelle localization by membrane tethering localization cellular component assembly organelle localization cellular process cellular component organization or biogenesis membrane docking nucleus-vacuole junction assembly primary metabolic process metabolic process lipid metabolic process macromolecule localization cellular component biogenesis cellular component organization organelle localization by membrane tethering localization cellular component assembly organelle localization cellular process cellular component organization or biogenesis membrane docking nucleus-vacuole junction assembly primary metabolic process metabolic process lipid metabolic process macromolecule localization intracellular protein localization catabolic process macroautophagy autophagy piecemeal microautophagy of the nucleus microautophagy nucleophagy process utilizing autophagic mechanism	membrane-bounded organelle nuclear outer membrane intracellular anatomical structure nuclear membrane membrane nucleus organelle outer membrane intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle organelle membrane-bounded organelle nuclear outer membrane intracellular anatomical structure nuclear membrane membrane nucleus organelle outer membrane intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network nuclear envelope outer membrane organelle membrane membrane-enclosed lumen intracellular organelle lumen organelle lumen nuclear periphery nuclear lumen nucleus-vacuole junction organelle membrane contact site
A, C	Vacuolar protein 8	protein-membrane adaptor activity protein-macromolecule adaptor activity molecular adaptor activity identical protein binding protein binding binding	cellular component biogenesis cellular component organization organelle localization by membrane tethering localization cellular component assembly organelle localization cellular process cellular component organization or biogenesis membrane docking nucleus-vacuole junction assembly establishment of protein localization cellular localization transport protein targeting cellular component biogenesis cellular component organization organelle localization by membrane tethering localization cellular component assembly organelle localization cellular process cellular component organization or biogenesis membrane docking nucleus-vacuole junction assembly establishment of protein localization cellular localization transport protein targeting establishment of protein localization to vacuole cytoplasm to vacuole targeting by the Cvt pathway vesicle organization establishment of localization in cell intracellular protein localization process utilizing autophagic mechanism protein targeting to vacuole organelle assembly intracellular transport protein localization to vacuole establishment of localization organelle organization establishment of protein localization to organelle protein transport protein localization to organelle macromolecule localization vacuolar transport Cvt vesicle assembly intracellular protein transport autophagosome assembly catabolic process vacuole organization macroautophagy autophagy autophagosome organization metabolic process piecemeal microautophagy of the nucleus microautophagy nucleophagy protein-containing complex localization primary metabolic process lipid metabolic process autophagy of peroxisome pexophagy organelle fusion vacuole fusion vacuole fusion, non-autophagic ribophagy organelle inheritance vacuole inheritance protein localization to membrane raft localization within membrane protein localization to membrane establishment of organelle localization lipophagy protein localization to phagophore assembly site	cellular anatomical structure membrane nucleus-vacuole junction organelle membrane contact site organelle membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope nuclear envelope cellular anatomical structure membrane nucleus-vacuole junction organelle membrane contact site organelle membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope nuclear envelope organelle membrane cytoplasm cytosol membrane microdomain membrane raft vacuolar membrane storage vacuole lytic vacuole vacuole fungal-type vacuole lytic vacuole membrane bounding membrane of organelle fungal-type vacuole membrane nuclear outer membrane organelle outer membrane nuclear outer membrane-endoplasmic reticulum membrane network outer membrane Myo2p-Vac17p-Vac8p transport complex protein-containing complex phagophore assembly site

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR016024	Armadillo-type fold	Homologous Superfamily
A, C	IPR000225	Armadillo	Repeat
A, C	IPR011989	Armadillo-like helical	Homologous Superfamily
A, C	IPR045156	Vacuolar protein 8	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.