5XFO
Structure of the N-terminal domains of PHF1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF18104 | e5xfoA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF18104 | ECOD (1.6) |
A | F_UNCLASSIFIED | e5xfoA4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e5xfoA3 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00628 | e5xfoA2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PF00628 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00628 | PHD-finger (PHD) | PHD-finger | PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3]. | Domain | |
PF18104 | Jumonji domain-containing protein 2A Tudor domain (Tudor_2) | Jumonji domain-containing protein 2A Tudor domain | This is the tudor domain found in histone demethylase Jumonji domain-containing protein 2A (JMJD2A). Structure and function analysis indicate that this domain can recognize equally well two unrelated histone peptides, H3K4me3 and H4K20me3, by means o ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR025894 | Polycomb-like MTF2 factor 2, C-terminal domain | Domain | |
IPR001965 | Zinc finger, PHD-type | Domain | |
IPR002999 | Tudor domain | Domain | |
IPR047010 | PHD finger protein 1, PHD finger 2 | Domain | |
IPR019787 | Zinc finger, PHD-finger | Domain | |
IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily | |
IPR019786 | Zinc finger, PHD-type, conserved site | Conserved Site | |
IPR031202 | PHD finger protein 1, PHD finger 1 | Domain | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR047399 | PHD finger protein 1, Tudor domain | Domain | |
IPR040477 | Lysine-specific demethylase 4-like, Tudor domain | Domain |