5X11

Crystal structure of Bacillus subtilis PadR in complex with operator DNA

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
E [auth A]PF03551,PF10400e5x11A1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03551,PF10400ECOD (1.6)
F [auth B]PF03551,PF10400e5x11B1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03551,PF10400ECOD (1.6)
G [auth C]PF03551,PF10400e5x11C1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03551,PF10400ECOD (1.6)
H [auth D]PF03551,PF10400e5x11D1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03551,PF10400ECOD (1.6)
I [auth E]PF03551,PF10400e5x11E1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03551,PF10400ECOD (1.6)
J [auth F]PF03551,PF10400e5x11F1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03551,PF10400ECOD (1.6)
K [auth G]PF03551,PF10400e5x11G1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03551,PF10400ECOD (1.6)
L [auth H]PF03551,PF10400e5x11H1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03551,PF10400ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
E [auth A]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
F [auth B]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
G [auth C]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
H [auth D]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
I [auth E]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
J [auth F]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
K [auth G]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
L [auth H]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF10400Virulence activator alpha C-term (Vir_act_alpha_C)Virulence activator alpha C-term- Family
PF03551Transcriptional regulator PadR-like family (PadR)Transcriptional regulator PadR-like familyMembers of this family are transcriptional regulators that appear to be related to the Pfam:PF01047 family. This family includes PadR Swiss:Q9EXE6 a protein that is involved in negative regulation of phenolic acid metabolism.Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR018309Transcription regulator PadR, C-terminalDomain
IPR005149Transcription regulator PadR, N-terminalDomain
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily