5WX8 | pdb_00005wx8

Human herpesvirus 6A immediate early protein 2 C-terminal domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	UNK_F_TYPE	e5wx8D1	A: a+b two layers	X: Alpha-beta plaits	H: Viral DNA-binding domain (From Topology)	T: Viral DNA-binding domain	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e5wx8C1	A: a+b two layers	X: Alpha-beta plaits	H: Viral DNA-binding domain (From Topology)	T: Viral DNA-binding domain	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e5wx8B1	A: a+b two layers	X: Alpha-beta plaits	H: Viral DNA-binding domain (From Topology)	T: Viral DNA-binding domain	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e5wx8A1	A: a+b two layers	X: Alpha-beta plaits	H: Viral DNA-binding domain (From Topology)	T: Viral DNA-binding domain	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF03361	IE2/3-like DNA-binding domain (Herpes_IE2_3)	IE2/3-like DNA-binding domain	This domain is found C-terminal in the Herpes virus 6A intermediate/early protein 2 (IE2) and related proteins from Herpesvirales. The C-terminal region of HHV-6A IE2 is involved in dimerization, DNA binding, and transcription factor binding. This do ...	This domain is found C-terminal in the Herpes virus 6A intermediate/early protein 2 (IE2) and related proteins from Herpesvirales. The C-terminal region of HHV-6A IE2 is involved in dimerization, DNA binding, and transcription factor binding. This domain forms a dimeric alpha/beta barrel stabilized by two interchanging long loops [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Immediate-early protein 2	DNA binding binding nucleic acid binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR005507	Human herpesvirus 6 immediate early protein	Family
A, B, C, D	IPR005028	Herpesvirus intermediate/early protein 2/3, DNA-binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.