5WWI | pdb_00005wwi

Crystal Structure of HLA-A*2402 in complex with avian influenza A(H7N9) virus-derived peptide H7-25 (data set 1)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMHC antigen-recognition domain 8033653 3000521 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054579 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPeptidase_M1e5wwiB1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Peptidase_M1ECOD (v294.1)
APeptidase_M1e5wwiA1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Peptidase_M1ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A3.30.500.10 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2-DB Chain A, domain 1CATH (4.3.0)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
MH1 HLA-A*2301 B2M Homo sapiens (human) B2M*01, B2M*02 C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202611-0)
MH1 HLA-A*2301 I-ALPHA Homo sapiens (human) HLA-A*2301, HLA-A*2402, HLA-A*2403, HLA-A*2410, HLA-A*2422, HLA-A*2426, HLA-A*2427, HLA-A*2454, HLA-A*2453, HLA-A*2451, HLA-A*2479, HLA-A*2317 G-DOMAIN G-ALPHA1, G-DOMAIN G-ALPHA2, C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202611-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
PF00129Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)Class I Histocompatibility antigen, domains alpha 1 and 2Domain
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth E]LEU-TYR-LYS-LYS-LEU-LYS-ARG-GLU-MET-THR-PHE
Beta-2-microglobulin
HLA class I histocompatibility antigen, A-24 alpha chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth E]IPR015799Influenza matrix M1, N-terminal subdomain 2Homologous Superfamily
C [auth E]IPR013188Influenza matrix M1, C-terminalDomain
C [auth E]IPR001561Influenza matrix M1, N-terminalDomain
C [auth E]IPR015423Influenza matrix M1, N-terminal subdomain 1Homologous Superfamily
C [auth E]IPR037533Matrix protein 1Family
C [auth E]IPR036039Influenza virus matrix protein M1Homologous Superfamily
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
IPR003597Immunoglobulin C1-setDomain
IPR015707Beta-2-MicroglobulinFamily
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR010579MHC class I, alpha chain, C-terminalDomain
IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
IPR003597Immunoglobulin C1-setDomain
IPR011161MHC class I-like antigen recognition-likeDomain
IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP61769
PharosP04439