5WI4 | pdb_00005wi4

CRYSTAL STRUCTURE OF DYNLT1/TCTEX-1 IN COMPLEX WITH ARHGEF2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	DLC-like	8066461	3000821	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DLC-like	8066461	3000821	SCOP2B (2022-06-29)
A	SCOP2 Family	Tctex-1-like	8066460	4004068	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	DLC-like	8066461	3000821	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Tctex-1	e5wi4C1	A: a+b two layers	X: DLC (From Topology)	H: DLC (From Topology)	T: DLC	F: Tctex-1	ECOD (1.6)
B	Tctex-1	e5wi4B1	A: a+b two layers	X: DLC (From Topology)	H: DLC (From Topology)	T: DLC	F: Tctex-1	ECOD (1.6)
A	Tctex-1	e5wi4A1	A: a+b two layers	X: DLC (From Topology)	H: DLC (From Topology)	T: DLC	F: Tctex-1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.30.1140.40	Alpha Beta	2-Layer Sandwich	Ribosomal protein S3 C-terminal domain	Tctex-1	CATH (utative)
B	3.30.1140.40	Alpha Beta	2-Layer Sandwich	Ribosomal protein S3 C-terminal domain	Tctex-1	CATH (utative)
A	3.30.1140.40	Alpha Beta	2-Layer Sandwich	Ribosomal protein S3 C-terminal domain	Tctex-1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF03645	Tctex-1 family (Tctex-1)	Tctex-1 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Dynein light chain Tctex-type 1,Rho guanine nucleotide exchange factor 2	protein binding binding G-protein beta-subunit binding GTP-dependent protein binding small GTPase binding enzyme binding GTPase binding cytoskeletal protein binding microtubule binding tubulin binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity protein binding binding G-protein beta-subunit binding GTP-dependent protein binding small GTPase binding enzyme binding GTPase binding cytoskeletal protein binding microtubule binding tubulin binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	regulation of neuron projection development multicellular organismal process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development regulation of neuron projection development multicellular organismal process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development cell differentiation anatomical structure development positive regulation of cell projection organization cellular component organization or biogenesis positive regulation of cellular process system development developmental process regulation of biological process plasma membrane bounded cell projection organization regulation of cell projection organization biological regulation nervous system development generation of neurons neuron development cellular process regulation of plasma membrane bounded cell projection organization establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization establishment or maintenance of cell polarity mitotic cell cycle localization establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation organelle localization establishment of localization in cell cell cycle microtubule cytoskeleton organization involved in mitosis cell cycle process establishment of localization establishment of cell polarity organelle organization mitotic cell cycle process establishment of mitotic spindle orientation microtubule-based process cytoskeleton organization cellular response to stimulus regulation of signaling response to stimulus signaling regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication G protein-coupled receptor signaling pathway signal transduction regulation of G protein-coupled receptor signaling pathway cell division regulation of developmental process negative regulation of biological process regulation of cell differentiation regulation of neurogenesis regulation of cell development regulation of nervous system development negative regulation of neurogenesis negative regulation of cellular process negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell differentiation regulation of multicellular organismal development negative regulation of developmental process negative regulation of cell development negative regulation of multicellular organismal process negative regulation of signaling negative regulation of intracellular signal transduction intracellular signal transduction negative regulation of cell communication regulation of intracellular signal transduction intracellular signaling cassette negative regulation of response to stimulus regulation of MAPK cascade negative regulation of signal transduction negative regulation of ERK1 and ERK2 cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade negative regulation of MAPK cascade neuroblast proliferation cell population proliferation neuroblast division asymmetric cell division asymmetric neuroblast division neural precursor cell proliferation cell fate commitment interleukin-6 production positive regulation of macromolecule biosynthetic process positive regulation of interleukin-6 production regulation of interleukin-6 production positive regulation of metabolic process positive regulation of biosynthetic process regulation of cytokine production cytokine production positive regulation of macromolecule metabolic process regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process positive regulation of locomotion regulation of cell motility regulation of neuron migration positive regulation of cell migration positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion neuron migration regulation of locomotion positive regulation of neuron migration biological process involved in interspecies interaction between organisms immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction regulation of Rho protein signal transduction Rho protein signal transduction cellular response to nitrogen compound response to oxygen-containing compound cellular response to muramyl dipeptide response to muramyl dipeptide response to nitrogen compound cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical negative regulation of organelle assembly membraneless organelle assembly cellular component biogenesis regulation of protein-containing complex assembly cellular component assembly regulation of podosome assembly protein-containing complex assembly organelle assembly negative regulation of cellular component organization podosome assembly protein-containing complex organization regulation of cellular component biogenesis regulation of organelle organization negative regulation of protein-containing complex assembly negative regulation of organelle organization regulation of organelle assembly negative regulation of podosome assembly positive regulation of DNA-binding transcription factor activity positive regulation of NF-kappaB transcription factor activity RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process positive regulation of molecular function nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of molecular function regulation of DNA-binding transcription factor activity regulation of DNA-templated transcription positive regulation of neuron differentiation positive regulation of developmental process positive regulation of cell differentiation regulation of neuron differentiation anatomical structure morphogenesis cell morphogenesis regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization positive regulation of DNA-templated transcription transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization negative regulation of microtubule depolymerization protein-containing complex disassembly regulation of protein-containing complex disassembly microtubule polymerization or depolymerization regulation of microtubule depolymerization negative regulation of protein-containing complex disassembly negative regulation of supramolecular fiber organization cellular component disassembly negative regulation of microtubule polymerization or depolymerization regulation of protein depolymerization negative regulation of cytoskeleton organization regulation of microtubule-based process negative regulation of protein depolymerization microtubule depolymerization regulation of supramolecular fiber organization protein depolymerization regulation of microtubule cytoskeleton organization regulation of protein modification process positive regulation of phosphorylation regulation of protein phosphorylation positive regulation of protein metabolic process peptidyl-tyrosine modification positive regulation of phosphate metabolic process positive regulation of peptidyl-tyrosine phosphorylation positive regulation of protein modification process peptidyl-amino acid modification phosphate-containing compound metabolic process protein metabolic process protein modification process phosphorus metabolic process positive regulation of protein phosphorylation protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation regulation of protein metabolic process regulation of peptidyl-tyrosine phosphorylation macromolecule modification regulation of phosphorylation regulation of phosphorus metabolic process peptidyl-tyrosine phosphorylation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system photoreceptor inner segment somatodendritic compartment cell body neuronal cell body cytoskeleton membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system photoreceptor inner segment somatodendritic compartment cell body neuronal cell body cytoskeleton spindle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton growth cone axon cell projection distal axon neuron projection plasma membrane bounded cell projection site of polarized growth protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex microtubule associated complex polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex vesicle ruffle cell leading edge plasma membrane membrane leading edge membrane cell periphery ruffle membrane plasma membrane region cell projection membrane podosome actin cytoskeleton cytoplasmic vesicle intracellular vesicle dendrite dendritic tree dendritic shaft postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization synapse cell junction asymmetric synapse cell-cell junction apical junction complex bicellular tight junction tight junction anchoring junction

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR038586	Tctex-1-like superfamily	Homologous Superfamily
A, B, C	IPR005334	Dynein light chain Tctex-1 like	Family
A, B, C	IPR037806	ARHGEF2, PH domain	Domain
A, B, C	IPR001849	Pleckstrin homology domain	Domain
A, B, C	IPR000219	Dbl homology domain	Domain
A, B, C	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B, C	IPR002219	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Domain
A, B, C	IPR041020	ARHGEF1-like, PH domain	Domain
A, B, C	IPR051632	Rho guanine nucleotide exchange factor	Family
A, B, C	IPR035899	Dbl homology (DH) domain superfamily	Homologous Superfamily
A, B, C	IPR046349	C1-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.