5W3X | pdb_00005w3x

Crystal structure of PopP2 in complex with IP6, AcCoA and the WRKY domain of RRS1-R .

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5w3xd_	Small proteins	WRKY DNA-binding domain	WRKY DNA-binding domain	automated matches	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
B	d5w3xb_	Small proteins	WRKY DNA-binding domain	WRKY DNA-binding domain	automated matches	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2 Family	WRKY DNA-binding domain	8089579	4003937	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	WRKY DNA-binding domain	8089580	3001868	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	WRKY DNA-binding domain	8089580	3001868	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Abhydrolase_3, BD-FAE	e5w3xC1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Abhydrolase_3, BD-FAE	ECOD (v294.1)
A	Abhydrolase_3, BD-FAE	e5w3xA1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Abhydrolase_3, BD-FAE	ECOD (v294.1)
D	Nrd1-Seb1_dom2	e5w3xD1	A: a/b three-layered sandwiches	X: CRISPR-associated protein Cse2	H: CRISPR-associated protein Cse2	T: CRISPR-associated protein Cse2	F: Nrd1-Seb1_dom2	ECOD (v294.1)
B	Nrd1-Seb1_dom2	e5w3xB1	A: a/b three-layered sandwiches	X: CRISPR-associated protein Cse2	H: CRISPR-associated protein Cse2	T: CRISPR-associated protein Cse2	F: Nrd1-Seb1_dom2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.20.25.80	Mainly Beta	Single Sheet	N-terminal domain of TfIIb	WRKY domain	CATH (4.3.0)
B	2.20.25.80	Mainly Beta	Single Sheet	N-terminal domain of TfIIb	WRKY domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	PopP2 protein	acyltransferase activity transferase activity catalytic activity	-	-
B, D	Disease resistance protein RRS1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding transcription regulator activity DNA-binding transcription factor activity sequence-specific DNA binding DNA binding nucleic acid binding	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication defense response response to stress	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR005083	Serine/Threonine acetyltransferase YopJ-like	Family
B, D	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	Domain
B, D	IPR042197	Apoptotic protease-activating factors, helical domain	Homologous Superfamily
B, D	IPR003657	WRKY domain	Domain
B, D	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
B, D	IPR011713	Leucine-rich repeat 3	Repeat
B, D	IPR036576	WRKY domain superfamily	Homologous Superfamily
B, D	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
B, D	IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Homologous Superfamily
B, D	IPR058192	Disease resistance protein Roq1-like, winged-helix domain	Domain
B, D	IPR044974	Disease resistance protein, plants	Family
B, D	IPR002182	NB-ARC	Domain
B, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.