5W1R
Cryo-EM structure of DNAPKcs
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e5w1rA5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
A | CRM1_C | e5w1rA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: CRM1_C | ECOD (1.6) |
A | CLASP_N_2 | e5w1rA3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: CLASP_N_2 | ECOD (1.6) |
A | PI3_PI4_kinase | e5w1rA1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PI3_PI4_kinase | ECOD (1.6) |
A | FATC_like | e5w1rA4 | A: extended segments | X: FATC domain (From Topology) | H: FATC domain (From Topology) | T: FATC domain | F: FATC_like | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08163 | DNA-dependent protein kinase catalytic subunit, CC3 (DNAPKcs_CC3) | DNA-dependent protein kinase catalytic subunit, CC3 | - | Repeat | |
PF02260 | FATC domain (FATC) | FATC domain | - | Family | |
PF00454 | Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase) | Phosphatidylinositol 3- and 4-kinase | - | Family | |
PF02259 | FAT domain (FAT) | FAT domain | - | Repeat | |
PF20502 | DNA-dependent protein kinase catalytic subunit, CC1/2 (DNAPKcs_CC1-2) | DNA-dependent protein kinase catalytic subunit, CC1/2 | - | Repeat | |
PF19704 | DNA-PKcs, CC5 (DNAPKcs_CC5) | DNA-PKcs, CC5 | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR003151 | PIK-related kinase, FAT | Domain | |
IPR046803 | DNA-dependent protein kinase catalytic subunit, CC1/2 | Domain | |
IPR046804 | DNA-PKcs, N-terminal | Domain | |
IPR045581 | DNA-dependent protein kinase catalytic subunit, CC5 | Domain | |
IPR003152 | FATC domain | Domain | |
IPR012582 | DNA-dependent protein kinase catalytic subunit, CC3 | Domain | |
IPR011989 | Armadillo-like helical | Homologous Superfamily | |
IPR018936 | Phosphatidylinositol 3/4-kinase, conserved site | Conserved Site | |
IPR000403 | Phosphatidylinositol 3-/4-kinase, catalytic domain | Domain | |
IPR036940 | Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily | Homologous Superfamily | |
IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily | |
IPR037706 | DNA-dependent protein kinase catalytic subunit, catalytic domain | Domain | |
IPR014009 | PIK-related kinase | Domain |