5W10 | pdb_00005w10

Lcd1 GAF domain in complex with cAMP ligand

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	GAF domain-like	8099916	3000080	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GAF domain-like	8099916	3000080	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GAF domain-like	8099916	3000080	SCOP2B (2022-06-29)
A	SCOP2 Family	GAF domain	8099915	4001852	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	GAF domain-like	8099916	3000080	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Methyltr_RsmB-F	e5w10D1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: RelE-like	T: RelE-like	F: Methyltr_RsmB-F	ECOD (v294.1)
C	AMP-binding	e5w10C1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: RelE-like	T: RelE-like	F: AMP-binding	ECOD (v294.1)
B	Methyltr_RsmB-F	e5w10B1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: RelE-like	T: RelE-like	F: Methyltr_RsmB-F	ECOD (v294.1)
A	Methyltr_RsmB-F	e5w10A1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: RelE-like	T: RelE-like	F: Methyltr_RsmB-F	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	cGMP-specific phosphodiesterase	transferase activity nucleotidyltransferase activity catalytic activity diguanylate cyclase activity transferase activity, transferring phosphorus-containing groups binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	regulation of bacterial-type flagellum-dependent cell motility negative regulation of locomotion regulation of biological process regulation of cell motility regulation of cellular process biological regulation negative regulation of biological process archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility regulation of locomotion negative regulation of cellular process negative regulation of cell motility cellular process bacterial-type flagellum-dependent cell motility regulation of bacterial-type flagellum-dependent cell motility negative regulation of locomotion regulation of biological process regulation of cell motility regulation of cellular process biological regulation negative regulation of biological process archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility regulation of locomotion negative regulation of cellular process negative regulation of cell motility cellular process bacterial-type flagellum-dependent cell motility cell motility negative regulation of bacterial-type flagellum-dependent cell motility locomotion cell adhesion involved in biofilm formation cell aggregation biofilm formation biological process involved in intraspecies interaction between organisms cell-substrate adhesion single-species biofilm formation aggregation of unicellular organisms submerged biofilm formation cell adhesion involved in single-species biofilm formation cell adhesion single-species submerged biofilm formation	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR050469	Diguanylate cyclase Dgc-like, bacteria	Family
A, B, C, D	IPR000160	GGDEF domain	Domain
A, B, C, D	IPR003018	GAF domain	Domain
A, B, C, D	IPR029016	GAF-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A, B, C, D	IPR029787	Nucleotide cyclase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.