5VXK
2.55 A resolution structure of IpaD from Shigella flexneri in complex with single-domain antibody JMK-H2
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d5vxkb_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
B [auth A] | d5vxka_ | All alpha proteins | IpaD-like | IpaD-like | IpaD-like | automated matches | (Shigella flexneri ) [TaxId: 623 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth A] | SCOP2B Superfamily | IpaD-like | 8042947 | 3001578 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF07686 | e5vxkB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B [auth A] | PF06511 | e5vxkA1 | A: alpha bundles | X: IpaD-like (From Topology) | H: IpaD-like (From Topology) | T: IpaD-like | F: PF06511 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth A] | 1.20.1710.10 | Mainly Alpha | Up-down Bundle | IpaD-like | IpaD-like | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth B] | JMK-H2 antibody | VH | Vicugna pacos (alpaca) | IGHJ4*01, IGHJ6*01 | V-DOMAIN VH | IG | VH | IMGT (202420-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth B] | Heavy Chain | IGHV1 | - | invasin ipad | SAbDab (2024-05-24) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A] | PF06511 | Type III secretion systems tip complex components (T3SS_TC) | Type III secretion systems tip complex components | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth A] | IPR009483 | Type III secretion systems tip complex component IpaD/BipD/SipD | Family |
B [auth A] | IPR036708 | BipD-like superfamily | Homologous Superfamily |