Annotations: 5VQA

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5vqaA1	A: Four-helical up-and-down bundle	X: Immunoglobulin-related	H: Common fold of diphtheria toxin/transcription factors/cytochrome f	T: ANAPC3, SRP_TPR_like	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF23242	TRIP13-like, AAA+ ATPase lid C-terminal domain (AAA_lid_TRIP13_C)	TRIP13-like, AAA+ ATPase lid C-terminal domain	This domain is found at the C-terminal end of human Pachytene checkpoint protein 2 homolog (TRIP13) and similar eukaryotic proteins. It is normally found associated to Pfam:PF00004 and is predicted to show an alpha-helical configuration.	Domain
A	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Pachytene checkpoint protein 2 homolog	transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity identical protein binding protein binding	developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular developmental process oogenesis cell development cellular process involved in reproduction in multicellular organism female gamete generation cell differentiation developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular developmental process oogenesis cell development cellular process involved in reproduction in multicellular organism female gamete generation cell differentiation anatomical structure development germ cell development cellular process cellular response to stimulus regulation of cellular process regulation of cell cycle phase transition regulation of cellular component organization response to stimulus signaling regulation of reproductive process meiotic recombination checkpoint signaling negative regulation of biological process negative regulation of cell cycle cell cycle phase transition meiotic cell cycle process intracellular signal transduction cell communication cellular component organization negative regulation of cellular process negative regulation of cell cycle phase transition meiotic nuclear division signal transduction cell cycle cellular component organization or biogenesis regulation of cell cycle negative regulation of meiotic nuclear division cell cycle process regulation of biological process regulation of meiotic cell cycle negative regulation of cellular component organization regulation of cell cycle process meiotic cell cycle organelle fission biological regulation negative regulation of cell cycle process meiotic cell cycle checkpoint signaling regulation of organelle organization cell cycle checkpoint signaling regulation of meiotic nuclear division organelle organization nuclear division negative regulation of nuclear division negative regulation of organelle organization negative regulation of reproductive process regulation of nuclear division negative regulation of meiotic cell cycle homologous recombination nucleobase-containing compound metabolic process meiosis I reciprocal homologous recombination DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process reciprocal meiotic recombination meiosis I cell cycle process metabolic process macromolecule metabolic process meiotic chromosome segregation synaptonemal complex assembly cellular component biogenesis cellular component assembly synaptonemal complex organization chromosome segregation chromosome organization chromosome organization involved in meiotic cell cycle homologous chromosome pairing at meiosis nuclear chromosome segregation homologous chromosome segregation RNA metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II biosynthetic process spindle checkpoint signaling regulation of mitotic nuclear division negative regulation of mitotic cell cycle negative regulation of mitotic sister chromatid segregation negative regulation of chromosome organization mitotic spindle checkpoint signaling mitotic sister chromatid separation negative regulation of sister chromatid segregation mitotic spindle assembly checkpoint signaling sister chromatid segregation regulation of chromosome organization regulation of mitotic cell cycle phase transition regulation of mitotic sister chromatid segregation mitotic cell cycle process regulation of chromosome separation negative regulation of mitotic nuclear division regulation of chromosome segregation regulation of mitotic sister chromatid separation regulation of metaphase/anaphase transition of cell cycle spindle assembly checkpoint signaling regulation of mitotic metaphase/anaphase transition mitotic cell cycle regulation of mitotic cell cycle mitotic sister chromatid segregation negative regulation of mitotic metaphase/anaphase transition negative regulation of chromosome separation mitotic nuclear division negative regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling negative regulation of chromosome segregation chromosome separation regulation of sister chromatid segregation negative regulation of mitotic sister chromatid separation negative regulation of metaphase/anaphase transition of cell cycle metaphase/anaphase transition of mitotic cell cycle metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition developmental maturation oocyte development anatomical structure maturation oocyte maturation oocyte differentiation cell maturation spermatid development spermatid differentiation female meiosis I female meiotic nuclear division double-strand break repair cellular response to stress DNA damage response response to stress DNA repair male meiosis I male meiotic nuclear division	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome membrane-bounded organelle male germ cell nucleus nucleus germ cell nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR058249	Pachytene checkpoint protein 2, C-terminal	Domain
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR003959	ATPase, AAA-type, core	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR001270	ClpA/B family	Family
A	IPR003960	ATPase, AAA-type, conserved site	Conserved Site
A	IPR044539	Pachytene checkpoint protein 2-like	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q15645	mosaic variegated aneuploidy syndrome kidney Wilms tumor germ cell tumor aneuploidy embryonal neoplasm hepatocellular carcinoma lung cancer malignant pancreatic neoplasm adrenal cortex carcinoma Neoplasms, Germ Cell and Embryonal atopic eczema pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor ulcerative colitis ductal breast carcinoma in situ mosaic variegated aneuploidy syndrome kidney Wilms tumor germ cell tumor aneuploidy embryonal neoplasm hepatocellular carcinoma lung cancer malignant pancreatic neoplasm adrenal cortex carcinoma Neoplasms, Germ Cell and Embryonal atopic eczema pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor ulcerative colitis ductal breast carcinoma in situ intellectual disability large cell medulloblastoma malignant colon neoplasm medulloblastoma mosaic variegated aneuploidy syndrome 3 non-small cell lung carcinoma attention deficit hyperactivity disorder, inattentive type pancreatic intraductal papillary-mucinous neoplasm breast cancer psoriasis glioblastoma invasive ductal breast carcinoma lung adenocarcinoma malignant mesothelioma microcephaly anorexia nervosa ovarian cancer atypical teratoid rhabdoid tumor pituitary cancer breast carcinoma sinusitis endometriosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.