5VPH
CRYSTAL STRUCTURE OF DER P 1 COMPLEXED WITH FAB 4C1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | d5vphc2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | automated matches | MOUSE (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B [auth C] | d5vphc1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | MOUSE (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B [auth C] | d5vphc3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | MOUSE (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00112 | e5vphA1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: PF00112 | ECOD (1.6) |
B [auth C] | PF07654 | e5vphC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
B [auth C] | PF07686 | e5vphC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth D] | PF07654 | e5vphD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
C [auth D] | PF07686 | e5vphD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.70.10 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (4.3.0) |
B [auth C] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C [auth D] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth C] | mAb 4C1 | L-KAPPA | Mus musculus (house mouse) | IGKV14-111*01, IGKJ2*01, IGKJ2*02, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202416-0) |
C [auth D] | mAb 4C1 | FGF19 | Mus musculus (house mouse) | IGHV3-2*02, IGHJ3*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1, C-DOMAIN CH2 | IG | FAB-GAMMA-1_KAPPA | IMGT (202416-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth C] | Light Chain | IGKV14 | Kappa | peptidase 1 | SAbDab (2024-04-26) |
C [auth D] | Heavy Chain | IGHV3 | - | peptidase 1 | SAbDab (2024-04-26) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00112 | Papain family cysteine protease (Peptidase_C1) | Papain family cysteine protease | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Der p 1 allergen | ||||
B [auth C] | FAB 4C1 - LIGHT CHAIN | - | - | - |
C [auth D] | FAB 4C1 - HEAVY CHAIN | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily | |
IPR025661 | Cysteine peptidase, asparagine active site | Active Site | |
IPR000169 | Cysteine peptidase, cysteine active site | Active Site | |
IPR025660 | Cysteine peptidase, histidine active site | Active Site | |
IPR013128 | Peptidase C1A | Family | |
IPR000668 | Peptidase C1A, papain C-terminal | Domain | |
IPR013201 | Cathepsin propeptide inhibitor domain (I29) | Domain | |
IPR039417 | Papain-like cysteine endopeptidase | Domain |