5VOU | pdb_00005vou

Structure of AMPA receptor-TARP complex

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth F]SCOP2B SuperfamilyClaudin-like 8092551 3002606 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyClaudin-like 8092551 3002606 SCOP2B (2022-06-29)
D [auth H]SCOP2B SuperfamilyClaudin-like 8092551 3002606 SCOP2B (2022-06-29)
C [auth E]SCOP2B SuperfamilyClaudin-like 8092551 3002606 SCOP2B (2022-06-29)
F [auth B]SCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
B [auth D]SCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth F]Tubulin_Ce5vouF1 A: alpha bundlesX: gH main domainH: gH main domainT: gH main domainF: Tubulin_CECOD (develop294)
GTubulin_Ce5vouG1 A: alpha bundlesX: gH main domainH: gH main domainT: gH main domainF: Tubulin_CECOD (develop294)
D [auth H]Tubulin_Ce5vouH1 A: alpha bundlesX: gH main domainH: gH main domainT: gH main domainF: Tubulin_CECOD (develop294)
C [auth E]Tubulin_Ce5vouE1 A: alpha bundlesX: gH main domainH: gH main domainT: gH main domainF: Tubulin_CECOD (develop294)
F [auth B]Tubulin_Ce5vouB1 A: alpha bundlesX: gH main domainH: gH main domainT: gH main domainF: Tubulin_CECOD (develop294)
E [auth C]Tubulin_Ce5vouC1 A: alpha bundlesX: gH main domainH: gH main domainT: gH main domainF: Tubulin_CECOD (develop294)
B [auth D]Tubulin_Ce5vouD1 A: alpha bundlesX: gH main domainH: gH main domainT: gH main domainF: Tubulin_CECOD (develop294)
ATubulin_Ce5vouA1 A: alpha bundlesX: gH main domainH: gH main domainT: gH main domainF: Tubulin_CECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth E],
D [auth H],
G,
H [auth F]		PF00822PMP-22/EMP/MP20/Claudin family (PMP22_Claudin)PMP-22/EMP/MP20/Claudin family- Family
A,
B [auth D],
E [auth C],
F [auth B]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A,
B [auth D],
E [auth C],
F [auth B]		PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth E],
D [auth H],
G,
H [auth F]		Voltage-dependent calcium channel gamma-2 subunit
A,
B [auth D],
E [auth C],
F [auth B]		Glutamate receptor 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth E],
D [auth H],
G,
H [auth F]		IPR051072Voltage-dependent calcium channel gamma subunitFamily
C [auth E],
D [auth H],
G,
H [auth F]		IPR004031PMP-22/EMP/MP20/ClaudinFamily
C [auth E],
D [auth H],
G,
H [auth F]		IPR005422Voltage-dependent calcium channel, gamma-2 subunitFamily
C [auth E],
D [auth H],
G,
H [auth F]		IPR008368Voltage-dependent calcium channel, gamma subunitFamily
A,
B [auth D],
E [auth C],
F [auth B]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
A,
B [auth D],
E [auth C],
F [auth B]		IPR001508Ionotropic glutamate receptor, metazoaFamily
A,
B [auth D],
E [auth C],
F [auth B]		IPR001828Receptor, ligand binding regionDomain
A,
B [auth D],
E [auth C],
F [auth B]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
A,
B [auth D],
E [auth C],
F [auth B]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A,
B [auth D],
E [auth C],
F [auth B]		IPR015683Ionotropic glutamate receptorFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
OPMTransmembraneAlpha-helical polytopicIon channel (VIC) superfamilyGlutamate-gated Ion Channel (GIC) family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALChannels: Other Ion ChannelsGluA2 Glutamate receptor (AMPA-subtype), flop isoform (R at Q/R site, G at R/G site) in complex with TARP-γ2, full agonist quisqualate and positive modulator (R,R)-2b