5VES | pdb_00005ves

The 2.4A crystal structure of OmpA domain of OmpA from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5vesb_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	OmpA-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ) [TaxId: 588858 ],	SCOPe (2.08)
A	d5vesa_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	OmpA-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ) [TaxId: 588858 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	OmpA-like	8074155	3001650	SCOP2B (2022-06-29)
A	SCOP2 Family	OmpA-like	8074154	4001470	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	OmpA-like	8074155	3001650	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Glyco_hydro_77	e5vesB1	A: a/b three-layered sandwiches	X: HAD domain-like	H: beta-propeller	T: 8-bladed	F: Glyco_hydro_77	ECOD (v294.1)
A	Glyco_hydro_77	e5vesA1	A: a/b three-layered sandwiches	X: HAD domain-like	H: beta-propeller	T: 8-bladed	F: Glyco_hydro_77	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
A	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Outer membrane protein A	wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity	transmembrane transport localization transport monoatomic ion transmembrane transport monoatomic ion transport cellular process establishment of localization biological process involved in interspecies interaction between organisms biological process involved in interaction with host biological process involved in symbiotic interaction	protein-containing complex cellular anatomical structure membrane pore complex membrane protein complex cell periphery cell outer membrane external encapsulating structure cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR006664	Outer membrane protein, bacterial	Domain
A, B	IPR000498	Outer membrane protein OmpA-like, transmembrane domain	Domain
A, B	IPR006690	Outer membrane protein, OmpA-like, conserved site	Conserved Site
A, B	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
A, B	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
A, B	IPR011250	Outer membrane protein/outer membrane enzyme PagP, beta-barrel	Homologous Superfamily
A, B	IPR006665	OmpA-like domain	Domain
A, B	IPR002368	Outer membrane protein, OmpA	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.