5VBF | pdb_00005vbf

Crystal structure of succinate semialdehyde dehydrogenase from Burkholderia vietnamiensis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d5vbfh_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Burkholderia vietnamiensis ) [TaxId: 60552 ],	SCOPe (2.08)
G	d5vbfg_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Burkholderia vietnamiensis ) [TaxId: 60552 ],	SCOPe (2.08)
F	d5vbff_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Burkholderia vietnamiensis ) [TaxId: 60552 ],	SCOPe (2.08)
E	d5vbfe_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Burkholderia vietnamiensis ) [TaxId: 60552 ],	SCOPe (2.08)
D	d5vbfd_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Burkholderia vietnamiensis ) [TaxId: 60552 ],	SCOPe (2.08)
C	d5vbfc_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Burkholderia vietnamiensis ) [TaxId: 60552 ],	SCOPe (2.08)
B	d5vbfb_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Burkholderia vietnamiensis ) [TaxId: 60552 ],	SCOPe (2.08)
A	d5vbfa_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Burkholderia vietnamiensis ) [TaxId: 60552 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	ALDH-like	8072433	3001479	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ALDH-like	8072433	3001479	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ALDH-like	8072433	3001479	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ALDH-like	8072433	3001479	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ALDH-like	8072433	3001479	SCOP2B (2022-06-29)
C	SCOP2 Family	ALDH-like	8072432	4000806	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	ALDH-like	8072433	3001479	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	ALDH-like	8072433	3001479	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ALDH-like	8072433	3001479	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Spectrin	e5vbfH1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: Spectrin repeat	T: Spectrin repeat	F: Spectrin	ECOD (v294.1)
G	Spectrin	e5vbfG1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: Spectrin repeat	T: Spectrin repeat	F: Spectrin	ECOD (v294.1)
F	Spectrin	e5vbfF1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: Spectrin repeat	T: Spectrin repeat	F: Spectrin	ECOD (v294.1)
E	Spectrin	e5vbfE1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: Spectrin repeat	T: Spectrin repeat	F: Spectrin	ECOD (v294.1)
D	Spectrin	e5vbfD1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: Spectrin repeat	T: Spectrin repeat	F: Spectrin	ECOD (v294.1)
C	Spectrin	e5vbfC1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: Spectrin repeat	T: Spectrin repeat	F: Spectrin	ECOD (v294.1)
B	Spectrin	e5vbfB1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: Spectrin repeat	T: Spectrin repeat	F: Spectrin	ECOD (v294.1)
A	Spectrin	e5vbfA1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: Spectrin repeat	T: Spectrin repeat	F: Spectrin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
H	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
G	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
G	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
F	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
F	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
E	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
E	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
D	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
D	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
C	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
C	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
B	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
B	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
A	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
A	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	NAD-dependent succinate-semialdehyde dehydrogenase	oxidoreductase activity succinate-semialdehyde dehydrogenase [NAD(P)+] activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR050740	Aldehyde Dehydrogenase Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR015590	Aldehyde dehydrogenase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR016161	Aldehyde/histidinol dehydrogenase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR016162	Aldehyde dehydrogenase, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR016163	Aldehyde dehydrogenase, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.