5URF | pdb_00005urf

The structure of human bocavirus 1

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth t]	Fibrillarin	e5urft1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
Z	Fibrillarin	e5urfZ1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
YA [auth s]	Fibrillarin	e5urfs1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
Y	Fibrillarin	e5urfY1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
XA [auth r]	Fibrillarin	e5urfr1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
X	Fibrillarin	e5urfX1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
WA [auth q]	Fibrillarin	e5urfq1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
W	Fibrillarin	e5urfW1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
VA [auth p]	Fibrillarin	e5urfp1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
V	Fibrillarin	e5urfV1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
UA [auth o]	Fibrillarin	e5urfo1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
U	Fibrillarin	e5urfU1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
TA [auth n]	Fibrillarin	e5urfn1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
T	Fibrillarin	e5urfT1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
SA [auth m]	Fibrillarin	e5urfm1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
S	Fibrillarin	e5urfS1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
RA [auth l]	Fibrillarin	e5urfl1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
R	Fibrillarin	e5urfR1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
QA [auth k]	Fibrillarin	e5urfk1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
Q	Fibrillarin	e5urfQ1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
PA [auth j]	Fibrillarin	e5urfj1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
P	Fibrillarin	e5urfP1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
OA [auth i]	Fibrillarin	e5urfi1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
O	Fibrillarin	e5urfO1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
NA [auth h]	Fibrillarin	e5urfh1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
N	Fibrillarin	e5urfN1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
MA [auth g]	Fibrillarin	e5urfg1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
M	Fibrillarin	e5urfM1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
LA [auth f]	Fibrillarin	e5urff1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
L	Fibrillarin	e5urfL1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
KA [auth e]	Fibrillarin	e5urfe1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
K	Fibrillarin	e5urfK1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
JA [auth d]	Fibrillarin	e5urfd1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
J	Fibrillarin	e5urfJ1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
IA [auth c]	Fibrillarin	e5urfc1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
I	Fibrillarin	e5urfI1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
HB [auth 8]	Fibrillarin	e5urf81	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
HA [auth b]	Fibrillarin	e5urfb1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
H	Fibrillarin	e5urfH1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
GB [auth 7]	Fibrillarin	e5urf71	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
GA [auth a]	Fibrillarin	e5urfa1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
G	Fibrillarin	e5urfG1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
FB [auth z]	Fibrillarin	e5urfz1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
FA [auth 6]	Fibrillarin	e5urf61	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
F	Fibrillarin	e5urfF1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
EB [auth y]	Fibrillarin	e5urfy1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
EA [auth 5]	Fibrillarin	e5urf51	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
E	Fibrillarin	e5urfE1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
DB [auth x]	Fibrillarin	e5urfx1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
DA [auth 4]	Fibrillarin	e5urf41	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
D	Fibrillarin	e5urfD1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
CB [auth w]	Fibrillarin	e5urfw1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
CA [auth 3]	Fibrillarin	e5urf31	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
C	Fibrillarin	e5urfC1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
BB [auth v]	Fibrillarin	e5urfv1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
BA [auth 2]	Fibrillarin	e5urf21	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
B	Fibrillarin	e5urfB1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
AB [auth u]	Fibrillarin	e5urfu1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
AA [auth 1]	Fibrillarin	e5urf11	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)
A	Fibrillarin	e5urfA1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Fibrillarin	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth 1], AB [auth u], B, BA [auth 2], A, AA [auth 1], AB [auth u], B, BA [auth 2], BB [auth v], C, CA [auth 3], CB [auth w], D, DA [auth 4], DB [auth x], E, EA [auth 5], EB [auth y], F, FA [auth 6], FB [auth z], G, GA [auth a], GB [auth 7], H, HA [auth b], HB [auth 8], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	PF00740	Parvovirus coat protein VP1/VP2 (VP1_2)	Parvovirus coat protein VP1/VP2	This entry describes a common domain found in VP1 and VP2 Parvovirus coat proteins which together form a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-te ...	This entry describes a common domain found in VP1 and VP2 Parvovirus coat proteins which together form a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-terminal. VP2 is involved in packaging of the viral DNA [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth 1], AB [auth u], B, BA [auth 2], A, AA [auth 1], AB [auth u], B, BA [auth 2], BB [auth v], C, CA [auth 3], CB [auth w], D, DA [auth 4], DB [auth x], E, EA [auth 5], EB [auth y], F, FA [auth 6], FB [auth z], G, GA [auth a], GB [auth 7], H, HA [auth b], HB [auth 8], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	viral protein 3	phospholipase activity A2-type glycerophospholipase activity hydrolase activity, acting on ester bonds glycerophospholipase activity carboxylic ester hydrolase activity hydrolase activity catalytic activity lipase activity structural molecule activity	lipid catabolic process catabolic process metabolic process cellular process primary metabolic process lipid metabolic process	viral capsid virion component icosahedral viral capsid T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth 1], AB [auth u], B, BA [auth 2], A, AA [auth 1], AB [auth u], B, BA [auth 2], BB [auth v], C, CA [auth 3], CB [auth w], D, DA [auth 4], DB [auth x], E, EA [auth 5], EB [auth y], F, FA [auth 6], FB [auth z], G, GA [auth a], GB [auth 7], H, HA [auth b], HB [auth 8], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth 1], AB [auth u], B, BA [auth 2], A, AA [auth 1], AB [auth u], B, BA [auth 2], BB [auth v], C, CA [auth 3], CB [auth w], D, DA [auth 4], DB [auth x], E, EA [auth 5], EB [auth y], F, FA [auth 6], FB [auth z], G, GA [auth a], GB [auth 7], H, HA [auth b], HB [auth 8], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth 1], AB [auth u], B, BA [auth 2], A, AA [auth 1], AB [auth u], B, BA [auth 2], BB [auth v], C, CA [auth 3], CB [auth w], D, DA [auth 4], DB [auth x], E, EA [auth 5], EB [auth y], F, FA [auth 6], FB [auth z], G, GA [auth a], GB [auth 7], H, HA [auth b], HB [auth 8], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth 1], AB [auth u], B, BA [auth 2], A, AA [auth 1], AB [auth u], B, BA [auth 2], BB [auth v], C, CA [auth 3], CB [auth w], D, DA [auth 4], DB [auth x], E, EA [auth 5], EB [auth y], F, FA [auth 6], FB [auth z], G, GA [auth a], GB [auth 7], H, HA [auth b], HB [auth 8], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily