5UBD | pdb_00005ubd

Crystal structure of the N-terminal domain (domain 1) of RctB, RctB-1-124-L48M


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BHAT, HAT_Syf1_CNRKL1_N, HAT_PRP39_Ne5ubdB1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: HAT, HAT_Syf1_CNRKL1_N, HAT_PRP39_NECOD (v294.1)
AFlavi_Me5ubdA1 A: a/b three-layered sandwichesX: Small envelope protein MH: Small envelope protein MT: Small envelope protein MF: Flavi_MECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF18622RctB helix turn helix domain (HTH_55)RctB helix turn helix domainRctB is a highly conserved 75.3 kD protein (658 residues), which is unique to the Vibrionaceae. The first 500 amino acids of RctB are sufficient to mediate oriCII-based replication and its C-terminal 165 residues may mediate regulatory processes. Rct ...RctB is a highly conserved 75.3 kD protein (658 residues), which is unique to the Vibrionaceae. The first 500 amino acids of RctB are sufficient to mediate oriCII-based replication and its C-terminal 165 residues may mediate regulatory processes. RctB contains at least three DNA binding winged-helix-turn-helix motifs, and mutations within any of these severely compromise biological activity. This entry describes domain 1 located at the N-terminal region of RctB proteins. Mutational analysis show that it binds oriCII DNA, and that this function is critical for the capacity of RctB to mediate oriCII-based replication [1].
Domain