5TVI

Crystal structure of non-specific lipid transfer protein reveals non-canonical lipid binding: possible relevance in modulating allergenicity

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth V]	d5tviv_	All alpha proteins	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	automated matches	automated matches	(Solanum virginianum ) [TaxId: 223891 ],	SCOPe (2.08)
B [auth W]	d5tviw_	All alpha proteins	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	automated matches	automated matches	(Solanum virginianum ) [TaxId: 223891 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth V]	SCOP2B Superfamily	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	8095549	3000401	SCOP2B (2022-06-29)
B [auth W]	SCOP2 Family	Plant lipid-transfer and hydrophobic proteins	8095548	4000994	SCOP2 (2022-06-29)
B [auth W]	SCOP2 Superfamily	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	8095549	3000401	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth V]	PF00234	e5tviV1	A: alpha superhelices	X: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like	H: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA	T: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	F: PF00234	ECOD (1.6)
B [auth W]	PF00234	e5tviW1	A: alpha superhelices	X: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like	H: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA	T: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	F: PF00234	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth V]	1.10.110.10	Mainly Alpha	Orthogonal Bundle	Hydrophobic Seed Protein	Plant lipid-transfer and hydrophobic proteins	CATH (4.3.0)
B [auth W]	1.10.110.10	Mainly Alpha	Orthogonal Bundle	Hydrophobic Seed Protein	Plant lipid-transfer and hydrophobic proteins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth V], B [auth W]	PF00234	Protease inhibitor/seed storage/LTP family (Tryp_alpha_amyl)	Protease inhibitor/seed storage/LTP family	This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth V], B [auth W]	non specific lipid transfer protein	binding lipid binding	localization transport macromolecule localization organic substance transport lipid localization lipid transport establishment of localization	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth V], B [auth W]	IPR000528	Plant non-specific lipid-transfer protein/Par allergen	Family
A [auth V], B [auth W]	IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	Homologous Superfamily
A [auth V], B [auth W]	IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.