5TR8
Crystal structure of vaccine-elicited pan- influenza H1N1 neutralizing murine antibody 441D6.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth L] | d5tr8l2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | automated matches | Mouse (Mus musculus ) [TaxId: 10090 ], Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
| A [auth L] | d5tr8l1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | Mouse (Mus musculus ) [TaxId: 10090 ], Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
| B [auth H] | d5tr8h_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | Mouse (Mus musculus ) [TaxId: 10090 ], Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth L] | PF07654 | e5tr8L2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
| A [auth L] | PF07686 | e5tr8L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
| B [auth H] | PF07654 | e5tr8H2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
| B [auth H] | PF07686 | e5tr8H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| A [auth L] | Fab 441D6, Murine neutralizing antibody | L-KAPPA | Mus musculus (house mouse) | IGKV14-111*01, IGKJ1*01, IGKJ1*02, IGKJ2*01, IGKJ5*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-2C_KAPPA | IMGT (202416-0) |
| B [auth H] | Fab 441D6, Murine neutralizing antibody | VH-CH1 | Mus musculus (house mouse) | IGHV5-12-1*01, IGHJ2*02, IGHJ2*03, IGHG2C*01, IGHG2C*02, IGHG2C*03 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-2C_KAPPA | IMGT (202416-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| A [auth L] | Light Chain | IGKV14 | Kappa | - | SAbDab (2024-04-26) |
| B [auth H] | Heavy Chain | IGHV5 | - | - | SAbDab (2024-04-26) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A [auth L] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
| A [auth L] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |
| B [auth H] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
| B [auth H] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A [auth L] | IPR003597 | Immunoglobulin C1-set | Domain |
| A [auth L] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
| A [auth L] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
| A [auth L] | IPR003599 | Immunoglobulin subtype | Domain |
| A [auth L] | IPR013106 | Immunoglobulin V-set domain | Domain |
| A [auth L] | IPR007110 | Immunoglobulin-like domain | Domain |
| A [auth L] | IPR003006 | Immunoglobulin/major histocompatibility complex, conserved site | Conserved Site |
| B [auth H] | IPR003597 | Immunoglobulin C1-set | Domain |
| B [auth H] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
| B [auth H] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
| B [auth H] | IPR003599 | Immunoglobulin subtype | Domain |
| B [auth H] | IPR013106 | Immunoglobulin V-set domain | Domain |
| B [auth H] | IPR007110 | Immunoglobulin-like domain | Domain |
| B [auth H] | IPR003006 | Immunoglobulin/major histocompatibility complex, conserved site | Conserved Site |
