5TJ5 | pdb_00005tj5

Atomic model for the membrane-embedded motor of a eukaryotic V-ATPase


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
N [auth P]MCMe5tj5P01 A: a/b three-layered sandwichesX: Rossmann-likeH: P-loop domains-relatedT: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinaseF: MCMECOD (v294.1)
L [auth N]MMS1_Ne5tj5N1 A: a/b three-layered sandwichesX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_NECOD (v294.1)
K [auth M]MMS1_Ne5tj5M1 A: a/b three-layered sandwichesX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_NECOD (v294.1)
I [auth J]MMS1_Ne5tj5J1 A: a/b three-layered sandwichesX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_NECOD (v294.1)
H [auth I]MMM1, PF26544e5tj5I1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Aha1/BPI domain-likeF: MMM1, PF26544ECOD (v294.1)
G [auth H]SPRYe5tj5H1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: Type II ABC importer transmembrane domain foldT: Type II ABC importer transmembrane domain foldF: SPRYECOD (v294.1)
F [auth G]MMS1_Ne5tj5G1 A: a/b three-layered sandwichesX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_NECOD (v294.1)
E [auth F]e5tj5F1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F:ECOD (v294.1)
D [auth E]ANAPC4e5tj5E1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: ANAPC4ECOD (v294.1)
C [auth D]ANAPC4e5tj5D1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: ANAPC4ECOD (v294.1)
BMCMe5tj5B01 A: a/b three-layered sandwichesX: Rossmann-likeH: P-loop domains-relatedT: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinaseF: MCMECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth E]1.20.120.610 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) lithium bound rotor ring of v- atpaseCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
N [auth P]PF01992ATP synthase (C/AC39) subunit (vATP-synt_AC39)ATP synthase (C/AC39) subunit- Family
J [auth L]PF05493ATP synthase subunit H (ATP_synt_H)ATP synthase subunit H- Family
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. Domain
C [auth D]PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. Domain
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. Domain
PF01496V-type ATPase 116kDa subunit family (V_ATPase_I)V-type ATPase 116kDa subunit family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
N [auth P]V-type proton ATPase subunit d
M [auth O]V-type proton ATPase subunit f---
J [auth L]V-type proton ATPase subunit e
V-type proton ATPase subunit c
C [auth D]V-type proton ATPase subunit c'
V-type proton ATPase subunit c''
V-type proton ATPase subunit a

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
N [auth P]IPR044911V-type ATP synthase C/D subunit, domain 3 superfamilyHomologous Superfamily
N [auth P]IPR002843ATPase, V0 complex, C/D subunitFamily
N [auth P]IPR036079V-type ATP synthase subunit C/D subunit superfamilyHomologous Superfamily
N [auth P]IPR035067V-type ATPase subunit C/DHomologous Superfamily
N [auth P]IPR016727ATPase, V0 complex, subunit DFamily
J [auth L]IPR008389ATPase, V0 complex, subunit e1/e2Family
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain
IPR011555V-ATPase proteolipid subunit C, eukaryoticFamily
IPR000245V-ATPase proteolipid subunitFamily
C [auth D]IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
C [auth D]IPR002379V-ATPase proteolipid subunit C-like domainDomain
C [auth D]IPR011555V-ATPase proteolipid subunit C, eukaryoticFamily
C [auth D]IPR000245V-ATPase proteolipid subunitFamily
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain
IPR000245V-ATPase proteolipid subunitFamily
IPR026028ATPase, V0 complex, subunit 116kDa, eukaryoticFamily
IPR002490V-type ATPase, V0 complex, 116kDa subunit familyFamily