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Crystal structure of strain-specific glycan-dependent CD4 binding site-directed neutralizing antibody CAP257-RH1, in complex with HIV-1 strain RHPA gp120 core with an oligomannose N276 glycan. External Resource: Annotation Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) A [auth H] PF07654 e5t33H1 A: beta sandwiches X: Immunoglobulin-like beta-sandwich H: Immunoglobulin-related T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like F: PF07654 ECOD (1.6) A [auth H] PF07686 e5t33H2 A: beta sandwiches X: Immunoglobulin-like beta-sandwich H: Immunoglobulin-related T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like F: PF07686 ECOD (1.6) B [auth L] PF07654 e5t33L1 A: beta sandwiches X: Immunoglobulin-like beta-sandwich H: Immunoglobulin-related T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like F: PF07654 ECOD (1.6) B [auth L] PF07686 e5t33L2 A: beta sandwiches X: Immunoglobulin-like beta-sandwich H: Immunoglobulin-related T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like F: PF07686 ECOD (1.6) C [auth G] PF00516 e5t33G2 A: a+b two layers X: Ribosomal protein L31e-like H: Ribosomal protein L31e/gp120 outer domain (From Topology) T: Ribosomal protein L31e/gp120 outer domain F: PF00516 ECOD (1.6) C [auth G] PF00516 e5t33G1 A: a+b two layers X: gp120 inner domain (From Topology) H: gp120 inner domain (From Topology) T: gp120 inner domain F: PF00516 ECOD (1.6)
Chain Protein Name Description Organism Name Gene Allele Name(s) Domain Name(s) Receptor Type Receptor Description Provenance Source A [auth H] CAP257-RH1 VH-CH1 Homo sapiens (human) IGHV3-30*01, IGHV3-30*04, IGHV3-30*07, IGHV3-30*11, IGHV3-30*14, IGHV3-30*16, IGHV3-30*17, IGHV3-30-3*01, IGHV3-30-3*02, IGHV3-33*01, IGHV3-33*03, IGHV3-33*04, IGHV3-33*06, IGHV3-30-3*03, IGHJ6*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_LAMBDA IMGT (202422-0) B [auth L] CAP257-RH1 L-LAMBDA Homo sapiens (human) IGLV3-10*01, IGLJ3*02, IGLC2*01, IGLC2*02, IGLC3*04 V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA IG FAB-GAMMA-1_LAMBDA IMGT (202422-0)
Chain Chain Class Chain Subclass Chain Type Antigen Name(s) Provenance Source A [auth H] Heavy Chain IGHV3 - rhpa gp120 core SAbDab (2024-06-07) B [auth L] Light Chain IGLV3 Lambda rhpa gp120 core SAbDab (2024-06-07)
