Annotations: 5OY7

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
W	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
R [auth K]	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
P [auth G]	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
L [auth C]	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
D [auth O]	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
O [auth F]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
K [auth B]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
I [auth J]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
G [auth R]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
C [auth N]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	Core histone-like	8041272	3001387	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Core histone-like	8041272	3001387	SCOP2B (2022-06-29)
N [auth E]	SCOP2B Superfamily	Core histone-like	8041272	3001387	SCOP2B (2022-06-29)
J [auth A]	SCOP2B Superfamily	Core histone-like	8041272	3001387	SCOP2B (2022-06-29)
H [auth I]	SCOP2B Superfamily	Core histone-like	8041272	3001387	SCOP2B (2022-06-29)
F [auth Q]	SCOP2B Superfamily	Core histone-like	8041272	3001387	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	Core histone-like	8041272	3001387	SCOP2B (2022-06-29)
B [auth M]	SCOP2B Superfamily	Core histone-like	8041272	3001387	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
Q [auth H]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
M [auth D]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
E [auth P]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
A [auth L]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
W	C1-set	e5oy7W1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
S	C1-set	e5oy7S1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
R [auth K]	C1-set	e5oy7K1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
P [auth G]	C1-set	e5oy7G1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
L [auth C]	C1-set	e5oy7C1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
EA [auth e]	C1-set	e5oy7e1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
D [auth O]	C1-set	e5oy7O1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
AA [auth a]	C1-set	e5oy7a1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
Z	C1-set	e5oy7Z1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
V	C1-set	e5oy7V1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
O [auth F]	C1-set	e5oy7F1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
K [auth B]	C1-set	e5oy7B1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
I [auth J]	C1-set	e5oy7J1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
G [auth R]	C1-set	e5oy7R1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
DA [auth d]	C1-set	e5oy7d1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
C [auth N]	C1-set	e5oy7N1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
Y	C1-set	e5oy7Y1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
U	C1-set	e5oy7U1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
N [auth E]	C1-set	e5oy7E1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
J [auth A]	C1-set	e5oy7A1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
H [auth I]	C1-set	e5oy7I1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
F [auth Q]	C1-set	e5oy7Q1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
CA [auth c]	C1-set	e5oy7c1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
B [auth M]	C1-set	e5oy7M1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
X	C1-set	e5oy7X1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
T	C1-set	e5oy7T1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
Q [auth H]	C1-set	e5oy7H1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
M [auth D]	C1-set	e5oy7D1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
FA [auth f]	C1-set	e5oy7f1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
E [auth P]	C1-set	e5oy7P1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
BA [auth b]	C1-set	e5oy7b1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)
A [auth L]	C1-set	e5oy7L1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: C1-set	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], R [auth K], S, W	PF16211	C-terminus of histone H2A (Histone_H2A_C)	C-terminus of histone H2A	-	Family
AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], R [auth K], S, W	PF00125	Core histone H2A/H2B/H3/H4 domain (Histone)	Core histone H2A/H2B/H3/H4 domain		Domain
C [auth N], DA [auth d], G [auth R], I [auth J], K [auth B], C [auth N], DA [auth d], G [auth R], I [auth J], K [auth B], O [auth F], V, Z	PF15511	Centromere kinetochore component CENP-T histone fold (CENP-T_C)	Centromere kinetochore component CENP-T histone fold	CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...	CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].	Domain
B [auth M], CA [auth c], F [auth Q], H [auth I], J [auth A], B [auth M], CA [auth c], F [auth Q], H [auth I], J [auth A], N [auth E], U, Y	PF16211	C-terminus of histone H2A (Histone_H2A_C)	C-terminus of histone H2A	-	Family
B [auth M], CA [auth c], F [auth Q], H [auth I], J [auth A], B [auth M], CA [auth c], F [auth Q], H [auth I], J [auth A], N [auth E], U, Y	PF00125	Core histone H2A/H2B/H3/H4 domain (Histone)	Core histone H2A/H2B/H3/H4 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
HA [auth h]	DNA (619-MER)	-	-	-
GA [auth g]	DNA (619-MER)	-	-	-
AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], R [auth K], S, W	Histone H2A	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	regulation of cellular process negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression regulation of cellular process negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process biological regulation heterochromatin organization regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process cellular process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
C [auth N], DA [auth d], G [auth R], I [auth J], K [auth B], C [auth N], DA [auth d], G [auth R], I [auth J], K [auth B], O [auth F], V, Z	Histone H4	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B [auth M], CA [auth c], F [auth Q], H [auth I], J [auth A], B [auth M], CA [auth c], F [auth Q], H [auth I], J [auth A], N [auth E], U, Y	Histone H3	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus membrane-enclosed lumen protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
A [auth L], BA [auth b], E [auth P], FA [auth f], M [auth D], A [auth L], BA [auth b], E [auth P], FA [auth f], M [auth D], Q [auth H], T, X	Histone H2B 1.1	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], R [auth K], S, W	IPR009072	Histone-fold	Homologous Superfamily
AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], R [auth K], S, W	IPR002119	Histone H2A	Family
AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], R [auth K], S, W	IPR032454	Histone H2A, C-terminal domain	Domain
AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], R [auth K], S, W	IPR032458	Histone H2A conserved site	Conserved Site
AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], AA [auth a], D [auth O], EA [auth e], L [auth C], P [auth G], R [auth K], S, W	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
C [auth N], DA [auth d], G [auth R], I [auth J], K [auth B], C [auth N], DA [auth d], G [auth R], I [auth J], K [auth B], O [auth F], V, Z	IPR009072	Histone-fold	Homologous Superfamily
C [auth N], DA [auth d], G [auth R], I [auth J], K [auth B], C [auth N], DA [auth d], G [auth R], I [auth J], K [auth B], O [auth F], V, Z	IPR001951	Histone H4	Family
C [auth N], DA [auth d], G [auth R], I [auth J], K [auth B], C [auth N], DA [auth d], G [auth R], I [auth J], K [auth B], O [auth F], V, Z	IPR035425	CENP-T/Histone H4, histone fold	Domain
C [auth N], DA [auth d], G [auth R], I [auth J], K [auth B], C [auth N], DA [auth d], G [auth R], I [auth J], K [auth B], O [auth F], V, Z	IPR019809	Histone H4, conserved site	Conserved Site
C [auth N], DA [auth d], G [auth R], I [auth J], K [auth B], C [auth N], DA [auth d], G [auth R], I [auth J], K [auth B], O [auth F], V, Z	IPR004823	TATA box binding protein associated factor (TAF), histone-like fold domain	Domain
B [auth M], CA [auth c], F [auth Q], H [auth I], J [auth A], B [auth M], CA [auth c], F [auth Q], H [auth I], J [auth A], N [auth E], U, Y	IPR009072	Histone-fold	Homologous Superfamily
B [auth M], CA [auth c], F [auth Q], H [auth I], J [auth A], B [auth M], CA [auth c], F [auth Q], H [auth I], J [auth A], N [auth E], U, Y	IPR000164	Histone H3/CENP-A	Family
B [auth M], CA [auth c], F [auth Q], H [auth I], J [auth A], B [auth M], CA [auth c], F [auth Q], H [auth I], J [auth A], N [auth E], U, Y	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
A [auth L], BA [auth b], E [auth P], FA [auth f], M [auth D], A [auth L], BA [auth b], E [auth P], FA [auth f], M [auth D], Q [auth H], T, X	IPR009072	Histone-fold	Homologous Superfamily
A [auth L], BA [auth b], E [auth P], FA [auth f], M [auth D], A [auth L], BA [auth b], E [auth P], FA [auth f], M [auth D], Q [auth H], T, X	IPR055333	Histone H2B, conserved site	Conserved Site
A [auth L], BA [auth b], E [auth P], FA [auth f], M [auth D], A [auth L], BA [auth b], E [auth P], FA [auth f], M [auth D], Q [auth H], T, X	IPR000558	Histone H2B	Family
A [auth L], BA [auth b], E [auth P], FA [auth f], M [auth D], A [auth L], BA [auth b], E [auth P], FA [auth f], M [auth D], Q [auth H], T, X	IPR007125	Core Histone H2A/H2B/H3 domain	Domain

5OY7 | pdb_00005oy7

Structure of the 4_601_157 tetranucleosome (P1 form)

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 5OY7 | pdb_00005oy7

Structure of the 4_601_157 tetranucleosome (P1 form)

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

5OY7 | pdb_00005oy7